Information for 12-GGTCATAAATGCTGCT (Motif 28)

C T A G A C T G G C A T A G T C C G T A C A G T C G T A C G T A C G T A A C G T A C T G G A T C C G A T A C T G T A G C A C G T
Reverse Opposite:
C G T A A T C G A G T C C G T A C A T G T A G C G T C A G A C T G A C T A C G T G C T A G C A T C T A G C G T A G T A C A G T C
p-value:1e-6
log p-value:-1.467e+01
Information Content per bp:1.708
Number of Target Sequences with motif6.0
Percentage of Target Sequences with motif0.83%
Number of Background Sequences with motif17.6
Percentage of Background Sequences with motif0.04%
Average Position of motif in Targets56.8 +/- 33.0bp
Average Position of motif in Background59.6 +/- 32.0bp
Strand Bias (log2 ratio + to - strand density)1.0
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

PH0012.1_Cdx1/Jaspar

Match Rank:1
Score:0.54
Offset:-3
Orientation:forward strand
Alignment:---GGTCATAAATGCTGCT
TAAGGTAATAAAATTA---
 A C G T A C G T A C G T C T A G A C T G G C A T A G T C C G T A C A G T C G T A C G T A C G T A A C G T A C T G G A T C C G A T A C T G T A G C A C G T
C G A T C T G A T G C A C T A G T C A G G A C T G T C A C T G A C G A T G C T A C G T A G C T A G C T A A G C T C A G T G C T A A C G T A C G T A C G T

PH0065.1_Hoxc10/Jaspar

Match Rank:2
Score:0.53
Offset:-3
Orientation:forward strand
Alignment:---GGTCATAAATGCTGCT
TAAAGTCGTAAAACGT---
 A C G T A C G T A C G T C T A G A C T G G C A T A G T C C G T A C A G T C G T A C G T A C G T A A C G T A C T G G A T C C G A T A C T G T A G C A C G T
G A C T C G T A C G T A C T G A T C A G A G C T G T A C C T A G A C G T C G T A C G T A G C T A C G T A G A T C A T C G A C G T A C G T A C G T A C G T

PH0013.1_Cdx2/Jaspar

Match Rank:3
Score:0.53
Offset:-3
Orientation:forward strand
Alignment:---GGTCATAAATGCTGCT
AAAGGTAATAAAATTT---
 A C G T A C G T A C G T C T A G A C T G G C A T A G T C C G T A C A G T C G T A C G T A C G T A A C G T A C T G G A T C C G A T A C T G T A G C A C G T
C G T A T C G A T A C G C T A G T C A G A G C T G T C A C T G A C G A T C G T A C G T A G C T A G C T A G A C T C A G T G A C T A C G T A C G T A C G T

POL010.1_DCE_S_III/Jaspar

Match Rank:4
Score:0.52
Offset:12
Orientation:reverse strand
Alignment:GGTCATAAATGCTGCT-
------------NGCTN
 C T A G A C T G G C A T A G T C C G T A C A G T C G T A C G T A C G T A A C G T A C T G G A T C C G A T A C T G T A G C A C G T A C G T
A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T T A C G A C T G A G T C A C G T A T C G

HOXA9(Homeobox)/HSC-Hoxa9-ChIP-Seq(GSE33509)/Homer

Match Rank:5
Score:0.51
Offset:0
Orientation:forward strand
Alignment:GGTCATAAATGCTGCT
GGCCATAAATCA----
 C T A G A C T G G C A T A G T C C G T A C A G T C G T A C G T A C G T A A C G T A C T G G A T C C G A T A C T G T A G C A C G T
C T A G T A C G A G T C G T A C T C G A A C G T G T C A G C T A G C T A C G A T A G T C G C T A A C G T A C G T A C G T A C G T

Hoxc9(Homeobox)/Ainv15-Hoxc9-ChIP-Seq(GSE21812)/Homer

Match Rank:6
Score:0.51
Offset:0
Orientation:forward strand
Alignment:GGTCATAAATGCTGCT
GGCCATAAATCA----
 C T A G A C T G G C A T A G T C C G T A C A G T C G T A C G T A C G T A A C G T A C T G G A T C C G A T A C T G T A G C A C G T
C T A G T A C G G A T C G T A C C T G A A G C T T G C A G C T A C G T A G C A T G A T C G C T A A C G T A C G T A C G T A C G T

CDX4(Homeobox)/ZebrafishEmbryos-Cdx4.Myc-ChIP-Seq(GSE48254)/Homer

Match Rank:7
Score:0.51
Offset:0
Orientation:forward strand
Alignment:GGTCATAAATGCTGCT
NGYCATAAAWCH----
 C T A G A C T G G C A T A G T C C G T A C A G T C G T A C G T A C G T A A C G T A C T G G A T C C G A T A C T G T A G C A C G T
T A C G T C A G G A T C G T A C T C G A G A C T G C T A G C T A G C T A C G T A G A T C G T C A A C G T A C G T A C G T A C G T

PH0073.1_Hoxc9/Jaspar

Match Rank:8
Score:0.51
Offset:-3
Orientation:forward strand
Alignment:---GGTCATAAATGCTGCT
GGAGGTCATTAATTAT---
 A C G T A C G T A C G T C T A G A C T G G C A T A G T C C G T A C A G T C G T A C G T A C G T A A C G T A C T G G A T C C G A T A C T G T A G C A C G T
T C A G C A T G T C G A C T A G T C A G G A C T G T A C C T G A G C A T G C A T C G T A G C T A G A C T G A C T C G T A A C G T A C G T A C G T A C G T

MF0004.1_Nuclear_Receptor_class/Jaspar

Match Rank:9
Score:0.51
Offset:-1
Orientation:forward strand
Alignment:-GGTCATAAATGCTGCT
AGGTCA-----------
 A C G T C T A G A C T G G C A T A G T C C G T A C A G T C G T A C G T A C G T A A C G T A C T G G A T C C G A T A C T G T A G C A C G T
C T G A C A T G C A T G C G A T G T A C T G C A A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T

PH0077.1_Hoxd12/Jaspar

Match Rank:10
Score:0.51
Offset:-3
Orientation:forward strand
Alignment:---GGTCATAAATGCTGCT
CAAGGTCGTAAAATCTT--
 A C G T A C G T A C G T C T A G A C T G G C A T A G T C C G T A C A G T C G T A C G T A C G T A A C G T A C T G G A T C C G A T A C T G T A G C A C G T
G A C T G C T A C T G A T A C G T C A G A G C T G T A C C T A G A C G T C G T A C G T A C G T A G C T A G A C T G A T C G C A T C A G T A C G T A C G T