Information for 18-RWCKWSTCTT (Motif 40)

C T G A C G T A A T G C C A G T G C A T A T C G A C G T A G T C A G C T A C G T
Reverse Opposite:
C G T A C T G A A C T G C G T A A T G C C G T A G T C A T A C G C G A T G A C T
p-value:1e-4
log p-value:-1.052e+01
Information Content per bp:1.767
Number of Target Sequences with motif6.0
Percentage of Target Sequences with motif0.84%
Number of Background Sequences with motif37.0
Percentage of Background Sequences with motif0.08%
Average Position of motif in Targets27.6 +/- 16.3bp
Average Position of motif in Background43.6 +/- 17.3bp
Strand Bias (log2 ratio + to - strand density)0.6
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

Mecom/MA0029.1/Jaspar

Match Rank:1
Score:0.66
Offset:-4
Orientation:reverse strand
Alignment:----RWCKWSTCTT
TNTTATCTTATCTT
 A C G T A C G T A C G T A C G T C T G A C G T A A T G C C A G T G C A T A T C G A C G T A G T C A G C T A C G T
A C G T T A C G A G C T C G A T C T G A A C G T A G T C A G C T A C G T C T G A A C G T T A G C G C A T G A C T

PROX1/MA0794.1/Jaspar

Match Rank:2
Score:0.61
Offset:-1
Orientation:reverse strand
Alignment:-RWCKWSTCTT-
TAAGGCGTCTTG
 A C G T C T G A C G T A A T G C C A G T G C A T A T C G A C G T A G T C A G C T A C G T A C G T
A G C T T C G A G T C A T C A G C T A G G T A C C T A G A G C T G A T C C G A T G A C T T C A G

GATA3/MA0037.2/Jaspar

Match Rank:3
Score:0.59
Offset:1
Orientation:reverse strand
Alignment:RWCKWSTCTT
-TCTTATCT-
 C T G A C G T A A T G C C A G T G C A T A T C G A C G T A G T C A G C T A C G T
A C G T A G C T A G T C A C G T A C G T C G T A A C G T A G T C A C G T A C G T

Smad3(MAD)/NPC-Smad3-ChIP-Seq(GSE36673)/Homer

Match Rank:4
Score:0.57
Offset:3
Orientation:forward strand
Alignment:RWCKWSTCTT-
---TWGTCTGV
 C T G A C G T A A T G C C A G T G C A T A T C G A C G T A G T C A G C T A C G T A C G T
A C G T A C G T A C G T A G C T G C A T A C T G A C G T A G T C A C G T C T A G T A C G

Smad4(MAD)/ESC-SMAD4-ChIP-Seq(GSE29422)/Homer

Match Rank:5
Score:0.55
Offset:1
Orientation:forward strand
Alignment:RWCKWSTCTT-
-VBSYGTCTGG
 C T G A C G T A A T G C C A G T G C A T A T C G A C G T A G T C A G C T A C G T A C G T
A C G T T A C G A T C G T A G C G A T C A C T G A C G T A G T C A C G T C T A G A T C G

POL008.1_DCE_S_I/Jaspar

Match Rank:6
Score:0.55
Offset:6
Orientation:forward strand
Alignment:RWCKWSTCTT--
------GCTTCC
 C T G A C G T A A T G C C A G T G C A T A T C G A C G T A G T C A G C T A C G T A C G T A C G T
A C G T A C G T A C G T A C G T A C G T A C G T A C T G A T G C A G C T A C G T A T G C A T G C

Gata4/MA0482.1/Jaspar

Match Rank:7
Score:0.55
Offset:1
Orientation:forward strand
Alignment:RWCKWSTCTT--
-TCTTATCTCCC
 C T G A C G T A A T G C C A G T G C A T A T C G A C G T A G T C A G C T A C G T A C G T A C G T
A C G T A G C T A T G C A G C T A C G T G T C A A C G T A G T C C G A T A T G C G A T C A G T C

SD0002.1_at_AC_acceptor/Jaspar

Match Rank:8
Score:0.55
Offset:-1
Orientation:reverse strand
Alignment:-RWCKWSTCTT
NNACTTGCCTT
 A C G T C T G A C G T A A T G C C A G T G C A T A T C G A C G T A G T C A G C T A C G T
T C G A G A T C T G C A A G T C G A C T A G C T A C T G A G T C G A T C G C A T A C G T

MYF6/MA0667.1/Jaspar

Match Rank:9
Score:0.54
Offset:0
Orientation:forward strand
Alignment:RWCKWSTCTT
AACAGCTGTT
 C T G A C G T A A T G C C A G T G C A T A T C G A C G T A G T C A G C T A C G T
T C G A T C G A A G T C T C G A T C A G A G T C C G A T A T C G G A C T A G C T

MAFG::NFE2L1/MA0089.1/Jaspar

Match Rank:10
Score:0.54
Offset:5
Orientation:reverse strand
Alignment:RWCKWSTCTT-
-----GTCATN
 C T G A C G T A A T G C C A G T G C A T A T C G A C G T A G T C A G C T A C G T A C G T
A C G T A C G T A C G T A C G T A C G T T C A G A C G T G A T C C G T A A G C T A T C G