Information for 13-ATGAGATGTATMTTCA (Motif 21)

G T C A C A G T T A C G C G T A C T A G G T C A A C G T A C T G G A C T T G C A G A C T T G A C A C G T C G A T A G T C G T C A
Reverse Opposite:
A C G T A C T G C G T A C G T A A C T G C G T A A C G T C T G A A G T C C G T A A C G T A G T C A C G T A G T C G C T A A C G T
p-value:1e-10
log p-value:-2.413e+01
Information Content per bp:1.739
Number of Target Sequences with motif7.0
Percentage of Target Sequences with motif0.98%
Number of Background Sequences with motif7.0
Percentage of Background Sequences with motif0.02%
Average Position of motif in Targets63.0 +/- 19.4bp
Average Position of motif in Background53.5 +/- 24.1bp
Strand Bias (log2 ratio + to - strand density)1.6
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

OCT:OCT(POU,Homeobox)/NPC-Brn1-ChIP-Seq(GSE35496)/Homer

Match Rank:1
Score:0.60
Offset:2
Orientation:reverse strand
Alignment:ATGAGATGTATMTTCA-
--CTCATGAATATTCAT
 G T C A C A G T T A C G C G T A C T A G G T C A A C G T A C T G G A C T T G C A G A C T T G A C A C G T C G A T A G T C G T C A A C G T
A C G T A C G T T A G C G A C T G A T C C G T A A C G T T C A G G T C A C G T A A C G T C G T A C G A T A C G T A G T C C G T A C G A T

PH0084.1_Irx3_2/Jaspar

Match Rank:2
Score:0.59
Offset:-3
Orientation:reverse strand
Alignment:---ATGAGATGTATMTTCA
NNTATTACATGTANNNT--
 A C G T A C G T A C G T G T C A C A G T T A C G C G T A C T A G G T C A A C G T A C T G G A C T T G C A G A C T T G A C A C G T C G A T A G T C G T C A
G C A T C T G A G C A T G C T A A C G T C G A T C G T A G A T C C G T A G C A T C T A G C G A T G C T A C G A T G C T A G C A T G C A T A C G T A C G T

OCT:OCT(POU,Homeobox)/NPC-OCT6-ChIP-Seq(GSE43916)/Homer

Match Rank:3
Score:0.59
Offset:3
Orientation:reverse strand
Alignment:ATGAGATGTATMTTCA--
---AYATGYATATGCATR
 G T C A C A G T T A C G C G T A C T A G G T C A A C G T A C T G G A C T T G C A G A C T T G A C A C G T C G A T A G T C G T C A A C G T A C G T
A C G T A C G T A C G T C T G A G A C T C T G A G A C T C T A G G A T C C T G A G A C T C T G A G A C T C T A G G A T C C T G A G C A T C T A G

Pit1(Homeobox)/GCrat-Pit1-ChIP-Seq(GSE58009)/Homer

Match Rank:4
Score:0.58
Offset:5
Orientation:forward strand
Alignment:ATGAGATGTATMTTCA
-----ATGMATATDC-
 G T C A C A G T T A C G C G T A C T A G G T C A A C G T A C T G G A C T T G C A G A C T T G A C A C G T C G A T A G T C G T C A
A C G T A C G T A C G T A C G T A C G T G C T A A C G T C T A G G T A C G C T A G A C T C T G A G C A T C A T G G A T C A C G T

PH0082.1_Irx2/Jaspar

Match Rank:5
Score:0.58
Offset:-3
Orientation:reverse strand
Alignment:---ATGAGATGTATMTTCA
ANTNTTACATGTATNTA--
 A C G T A C G T A C G T G T C A C A G T T A C G C G T A C T A G G T C A A C G T A C T G G A C T T G C A G A C T T G A C A C G T C G A T A G T C G T C A
C G T A T G C A G C A T G A C T G A C T C G A T C G T A A G T C C G T A G C A T T A C G C G A T G C T A G A C T G C A T C G A T G C T A A C G T A C G T

PH0086.1_Irx5/Jaspar

Match Rank:6
Score:0.57
Offset:-3
Orientation:reverse strand
Alignment:---ATGAGATGTATMTTCA
ANTNNTACATGTANNTN--
 A C G T A C G T A C G T G T C A C A G T T A C G C G T A C T A G G T C A A C G T A C T G G A C T T G C A G A C T T G A C A C G T C G A T A G T C G T C A
G C T A G T C A G C A T G C A T C A G T C G A T G C T A A G T C C G T A G C A T T C A G C G A T G C T A C G A T G C T A G C A T G C A T A C G T A C G T

Brn2(POU,Homeobox)/NPC-Brn2-ChIP-Seq(GSE35496)/Homer

Match Rank:7
Score:0.57
Offset:5
Orientation:forward strand
Alignment:ATGAGATGTATMTTCA
-----ATGAATATTC-
 G T C A C A G T T A C G C G T A C T A G G T C A A C G T A C T G G A C T T G C A G A C T T G A C A C G T C G A T A G T C G T C A
A C G T A C G T A C G T A C G T A C G T G C T A A G C T T A C G G T C A C T G A C G A T C T G A G C A T C A G T A G T C A C G T

PH0083.1_Irx3_1/Jaspar

Match Rank:8
Score:0.57
Offset:-3
Orientation:reverse strand
Alignment:---ATGAGATGTATMTTCA
ANTATTACATGTANNNN--
 A C G T A C G T A C G T G T C A C A G T T A C G C G T A C T A G G T C A A C G T A C T G G A C T T G C A G A C T T G A C A C G T C G A T A G T C G T C A
G C T A C T A G G C A T G C T A A C G T C G A T C G T A A G T C C G T A G C A T T A C G C G A T G C T A A G C T G C A T G A C T G C A T A C G T A C G T

PH0085.1_Irx4/Jaspar

Match Rank:9
Score:0.56
Offset:-3
Orientation:reverse strand
Alignment:---ATGAGATGTATMTTCA
NNTTTTACATGTANNNT--
 A C G T A C G T A C G T G T C A C A G T T A C G C G T A C T A G G T C A A C G T A C T G G A C T T G C A G A C T T G A C A C G T C G A T A G T C G T C A
G C A T T A C G G C A T G C A T C A G T C G A T C G T A A G T C C G T A G C A T C T A G G C A T G C T A G A C T C G T A G C A T G C A T A C G T A C G T

PH0087.1_Irx6/Jaspar

Match Rank:10
Score:0.56
Offset:-3
Orientation:reverse strand
Alignment:---ATGAGATGTATMTTCA
ANTTNTACATGTANTTN--
 A C G T A C G T A C G T G T C A C A G T T A C G C G T A C T A G G T C A A C G T A C T G G A C T T G C A G A C T T G A C A C G T C G A T A G T C G T C A
G C T A C G A T C G A T G C A T A C G T C G A T C G T A A G T C C G T A G C A T C T A G C G A T G C T A G A C T C G A T C G A T C G A T A C G T A C G T