Information for 18-CATTTTGTTKCTGTGG (Motif 35)

A T G C G C T A C A G T A C G T A C G T A C G T C T A G C G A T A C G T A C G T G A T C C G A T A C T G C G A T A C T G A C T G
Reverse Opposite:
T A G C A G T C C G T A G T A C C G T A C A T G G T C A T G C A C G T A A G T C C G T A T C G A G T C A G C T A C A G T A T C G
p-value:1e-7
log p-value:-1.688e+01
Information Content per bp:1.707
Number of Target Sequences with motif7.0
Percentage of Target Sequences with motif0.96%
Number of Background Sequences with motif20.5
Percentage of Background Sequences with motif0.04%
Average Position of motif in Targets48.6 +/- 15.4bp
Average Position of motif in Background54.5 +/- 25.4bp
Strand Bias (log2 ratio + to - strand density)2.6
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

CDX2/MA0465.1/Jaspar

Match Rank:1
Score:0.61
Offset:2
Orientation:reverse strand
Alignment:CATTTTGTTKCTGTGG
--TTTTATGGCTN---
 A T G C G C T A C A G T A C G T A C G T A C G T C T A G C G A T A C G T A C G T G A T C C G A T A C T G C G A T A C T G A C T G
A C G T A C G T A G C T A C G T A C G T A C G T C G T A A C G T C A T G C T A G A G T C G A C T A G C T A C G T A C G T A C G T

Cdx2(Homeobox)/mES-Cdx2-ChIP-Seq(GSE14586)/Homer

Match Rank:2
Score:0.61
Offset:1
Orientation:reverse strand
Alignment:CATTTTGTTKCTGTGG
-NTTTTATGAC-----
 A T G C G C T A C A G T A C G T A C G T A C G T C T A G C G A T A C G T A C G T G A T C C G A T A C T G C G A T A C T G A C T G
A C G T C T G A C G A T A C G T A C G T A C G T C G T A A C G T C A T G C T G A A G T C A C G T A C G T A C G T A C G T A C G T

PH0046.1_Hoxa10/Jaspar

Match Rank:3
Score:0.60
Offset:-2
Orientation:reverse strand
Alignment:--CATTTTGTTKCTGTGG
TNAATTTTATTACCTN--
 A C G T A C G T A T G C G C T A C A G T A C G T A C G T A C G T C T A G C G A T A C G T A C G T G A T C C G A T A C T G C G A T A C T G A C T G
G C A T C A T G G T C A C G T A C G A T C G A T G C A T C G A T C G T A G A C T C A G T C T G A A G T C T G A C C A G T G T C A A C G T A C G T

Rfx5(HTH)/GM12878-Rfx5-ChIP-Seq(GSE31477)/Homer

Match Rank:4
Score:0.60
Offset:4
Orientation:reverse strand
Alignment:CATTTTGTTKCTGTGG
----CTGTTGCTAGGS
 A T G C G C T A C A G T A C G T A C G T A C G T C T A G C G A T A C G T A C G T G A T C C G A T A C T G C G A T A C T G A C T G
A C G T A C G T A C G T A C G T A G T C C G A T A C T G A C G T G A C T C T A G A G T C A G C T C T G A C A T G C T A G T A C G

PH0013.1_Cdx2/Jaspar

Match Rank:5
Score:0.57
Offset:-1
Orientation:reverse strand
Alignment:-CATTTTGTTKCTGTGG
NAATTTTATTACCNNN-
 A C G T A T G C G C T A C A G T A C G T A C G T A C G T C T A G C G A T A C G T A C G T G A T C C G A T A C T G C G A T A C T G A C T G
C T G A G T C A C T G A C G A T C G A T C G A T C G A T C G T A A G C T C A G T C T G A A G T C G A T C A C G T A G C T G C A T A C G T

HOXA10/MA0899.1/Jaspar

Match Rank:6
Score:0.57
Offset:1
Orientation:reverse strand
Alignment:CATTTTGTTKCTGTGG
-NTTTTATTACN----
 A T G C G C T A C A G T A C G T A C G T A C G T C T A G C G A T A C G T A C G T G A T C C G A T A C T G C G A T A C T G A C T G
A C G T C A G T C A G T C A G T G C A T G C A T C G T A A G C T A C G T C T G A A G T C G A T C A C G T A C G T A C G T A C G T

CDX1/MA0878.1/Jaspar

Match Rank:7
Score:0.57
Offset:2
Orientation:reverse strand
Alignment:CATTTTGTTKCTGTGG
--TTTTATTGC-----
 A T G C G C T A C A G T A C G T A C G T A C G T C T A G C G A T A C G T A C G T G A T C C G A T A C T G C G A T A C T G A C T G
A C G T A C G T C A G T C G A T G C A T C G A T C G T A A G C T C A G T C T A G A G T C A C G T A C G T A C G T A C G T A C G T

Hoxd9/MA0913.1/Jaspar

Match Rank:8
Score:0.57
Offset:1
Orientation:reverse strand
Alignment:CATTTTGTTKCTGTGG
-TTTTTATTGC-----
 A T G C G C T A C A G T A C G T A C G T A C G T C T A G C G A T A C G T A C G T G A T C C G A T A C T G C G A T A C T G A C T G
A C G T C G A T G C A T C A G T C G A T C G A T C G T A G A C T A C G T C T A G A G T C A C G T A C G T A C G T A C G T A C G T

PH0064.1_Hoxb9/Jaspar

Match Rank:9
Score:0.56
Offset:-2
Orientation:reverse strand
Alignment:--CATTTTGTTKCTGTGG
NGANTTTTATGGCTCN--
 A C G T A C G T A T G C G C T A C A G T A C G T A C G T A C G T C T A G C G A T A C G T A C G T G A T C C G A T A C T G C G A T A C T G A C T G
G A T C C A T G C T G A C G T A G C A T C G A T C G A T C G A T C G T A A G C T C A T G C T A G T A G C A G C T A G T C A G C T A C G T A C G T

PH0075.1_Hoxd10/Jaspar

Match Rank:10
Score:0.54
Offset:-3
Orientation:reverse strand
Alignment:---CATTTTGTTKCTGTGG
NTNAATTTTATTGNATT--
 A C G T A C G T A C G T A T G C G C T A C A G T A C G T A C G T A C G T C T A G C G A T A C G T A C G T G A T C C G A T A C T G C G A T A C T G A C T G
C G T A G C A T G C T A G C T A C T G A A G C T C G A T C G A T C G A T C T G A G C A T C A G T C T A G A G T C T G C A G A C T A C G T A C G T A C G T