Information for 7-GTBGAGTTAC (Motif 20)

A C T G C G A T A T C G A T C G C G T A A C T G A C G T C G A T T G C A A G T C
Reverse Opposite:
A C T G A C G T C G T A C G T A G T A C C G A T A T G C T A G C C G T A A G T C
p-value:1e-10
log p-value:-2.383e+01
Information Content per bp:1.789
Number of Target Sequences with motif14.0
Percentage of Target Sequences with motif1.92%
Number of Background Sequences with motif76.3
Percentage of Background Sequences with motif0.17%
Average Position of motif in Targets55.8 +/- 28.8bp
Average Position of motif in Background54.1 +/- 30.0bp
Strand Bias (log2 ratio + to - strand density)1.2
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

Six2(Homeobox)/NephronProgenitor-Six2-ChIP-Seq(GSE39837)/Homer

Match Rank:1
Score:0.66
Offset:-2
Orientation:reverse strand
Alignment:--GTBGAGTTAC
GKMTCADRTTWC
 A C G T A C G T A C T G C G A T A T C G A T C G C G T A A C T G A C G T C G A T T G C A A G T C
C T A G C A G T T G C A A C G T G A T C T C G A C T A G T C A G A C G T C A G T G C A T G A T C

Srebp2(bHLH)/HepG2-Srebp2-ChIP-Seq(GSE31477)/Homer

Match Rank:2
Score:0.61
Offset:0
Orientation:reverse strand
Alignment:GTBGAGTTAC--
GTGGCGTGACNG
 A C T G C G A T A T C G A T C G C G T A A C T G A C G T C G A T T G C A A G T C A C G T A C G T
T C A G A C G T C A T G A C T G A T G C A T C G A C G T A T C G C T G A A G T C G A T C C A T G

ZNF354C/MA0130.1/Jaspar

Match Rank:3
Score:0.61
Offset:0
Orientation:reverse strand
Alignment:GTBGAGTTAC
GTGGAT----
 A C T G C G A T A T C G A T C G C G T A A C T G A C G T C G A T T G C A A G T C
A T C G A C G T A C T G A C T G C G T A A C G T A C G T A C G T A C G T A C G T

Six1(Homeobox)/Myoblast-Six1-ChIP-Chip(GSE20150)/Homer

Match Rank:4
Score:0.59
Offset:-2
Orientation:forward strand
Alignment:--GTBGAGTTAC
GKVTCADRTTWC
 A C G T A C G T A C T G C G A T A T C G A T C G C G T A A C T G A C G T C G A T T G C A A G T C
C T A G C A T G T G C A A C G T A G T C C G T A C A T G T C A G A C G T A C G T G C T A A G T C

Mouse_Recombination_Hotspot(Zf)/Testis-DMC1-ChIP-Seq(GSE24438)/Homer

Match Rank:5
Score:0.58
Offset:-7
Orientation:forward strand
Alignment:-------GTBGAGTTAC---
ACTYKNATTCGTGNTACTTC
 A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C T G C G A T A T C G A T C G C G T A A C T G A C G T C G A T T G C A A G T C A C G T A C G T A C G T
C T G A G T A C G A C T A G T C C A G T T G C A C T G A A C G T A G C T G A T C C T A G C G A T A C T G A T G C G A C T C T G A G A T C G A C T A G C T G A T C

Foxh1(Forkhead)/hESC-FOXH1-ChIP-Seq(GSE29422)/Homer

Match Rank:6
Score:0.58
Offset:-3
Orientation:forward strand
Alignment:---GTBGAGTTAC
NNTGTGGATTSS-
 A C G T A C G T A C G T A C T G C G A T A T C G A T C G C G T A A C T G A C G T C G A T T G C A A G T C
C A T G G A C T G C A T A C T G A G C T A C T G A C T G C G T A G C A T A G C T A T C G T A C G A C G T

Srebp1a(bHLH)/HepG2-Srebp1a-ChIP-Seq(GSE31477)/Homer

Match Rank:7
Score:0.56
Offset:0
Orientation:reverse strand
Alignment:GTBGAGTTAC
ATGGGGTGAT
 A C T G C G A T A T C G A T C G C G T A A C T G A C G T C G A T T G C A A G T C
T C G A A G C T C A T G A C T G A T C G T A C G G A C T A T C G C G T A A G C T

Rfx5(HTH)/GM12878-Rfx5-ChIP-Seq(GSE31477)/Homer

Match Rank:8
Score:0.56
Offset:3
Orientation:reverse strand
Alignment:GTBGAGTTAC-----
---CTGTTGCTAGGS
 A C T G C G A T A T C G A T C G C G T A A C T G A C G T C G A T T G C A A G T C A C G T A C G T A C G T A C G T A C G T
A C G T A C G T A C G T A G T C C G A T A C T G A C G T G A C T C T A G A G T C A G C T C T G A C A T G C T A G T A C G

ZNF189(Zf)/HEK293-ZNF189.GFP-ChIP-Seq(GSE58341)/Homer

Match Rank:9
Score:0.55
Offset:1
Orientation:reverse strand
Alignment:GTBGAGTTAC-
-TKCTGTTCCA
 A C T G C G A T A T C G A T C G C G T A A C T G A C G T C G A T T G C A A G T C A C G T
A C G T A C G T C A G T T A G C A G C T T A C G C G A T A C G T A G T C G T A C G T C A

PB0141.1_Isgf3g_2/Jaspar

Match Rank:10
Score:0.54
Offset:-2
Orientation:reverse strand
Alignment:--GTBGAGTTAC--
NNGTANTGTTTTNC
 A C G T A C G T A C T G C G A T A T C G A T C G C G T A A C T G A C G T C G A T T G C A A G T C A C G T A C G T
G A C T C T G A C A T G C G A T G T C A T G C A G C A T A T C G G A C T G C A T G C A T G C A T A T C G T G A C