Information for 4-AVACATGYTS (Motif 3)

G T C A T A G C T C G A G A T C C T G A G C A T T A C G A G T C A C G T T A C G
Reverse Opposite:
A T G C T G C A T C A G A T G C C G T A G A C T C T A G A G C T A T C G C A G T
p-value:1e-18
log p-value:-4.249e+01
Information Content per bp:1.538
Number of Target Sequences with motif70.0
Percentage of Target Sequences with motif9.64%
Number of Background Sequences with motif1256.6
Percentage of Background Sequences with motif2.74%
Average Position of motif in Targets48.9 +/- 20.4bp
Average Position of motif in Background50.0 +/- 36.4bp
Strand Bias (log2 ratio + to - strand density)-0.2
Multiplicity (# of sites on avg that occur together)1.03
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

CLOCK/MA0819.1/Jaspar

Match Rank:1
Score:0.72
Offset:-1
Orientation:reverse strand
Alignment:-AVACATGYTS
AACACGTGTT-
 A C G T G T C A T A G C T C G A G A T C C T G A G C A T T A C G A G T C A C G T T A C G
C T G A T C G A T G A C T C G A A G T C C T A G A G C T A C T G A G C T G A C T A C G T

MF0007.1_bHLH(zip)_class/Jaspar

Match Rank:2
Score:0.68
Offset:1
Orientation:reverse strand
Alignment:AVACATGYTS
-CACGTGNT-
 G T C A T A G C T C G A G A T C C T G A G C A T T A C G A G T C A C G T T A C G
A C G T G A T C C G T A A T G C T A C G G A C T C T A G A T C G A G C T A C G T

OLIG1/MA0826.1/Jaspar

Match Rank:3
Score:0.68
Offset:-1
Orientation:reverse strand
Alignment:-AVACATGYTS
AACATATGTT-
 A C G T G T C A T A G C T C G A G A T C C T G A G C A T T A C G A G T C A C G T T A C G
C T G A T G C A G T A C C G T A A C G T T G C A G A C T A C T G A C G T A G C T A C G T

Npas2/MA0626.1/Jaspar

Match Rank:4
Score:0.67
Offset:-1
Orientation:reverse strand
Alignment:-AVACATGYTS
NACACGTGCN-
 A C G T G T C A T A G C T C G A G A T C C T G A G C A T T A C G A G T C A C G T T A C G
A C T G T G C A A G T C C G T A A G T C A C T G A C G T A C T G A T G C G A T C A C G T

Twist2/MA0633.1/Jaspar

Match Rank:5
Score:0.66
Offset:-1
Orientation:reverse strand
Alignment:-AVACATGYTS
NACATATGGN-
 A C G T G T C A T A G C T C G A G A T C C T G A G C A T T A C G A G T C A C G T T A C G
G T C A G T C A A G T C C G T A A G C T C T G A A C G T A C T G A C T G A G C T A C G T

BHLHE22/MA0818.1/Jaspar

Match Rank:6
Score:0.66
Offset:-1
Orientation:forward strand
Alignment:-AVACATGYTS
ACCATATGTT-
 A C G T G T C A T A G C T C G A G A T C C T G A G C A T T A C G A G T C A C G T T A C G
T C G A T G A C G T A C C T G A A G C T G T C A G A C T A C T G A G C T G A C T A C G T

HIF-1b(HLH)/T47D-HIF1b-ChIP-Seq(GSE59937)/Homer

Match Rank:7
Score:0.66
Offset:0
Orientation:forward strand
Alignment:AVACATGYTS
RTACGTGC--
 G T C A T A G C T C G A G A T C C T G A G C A T T A C G A G T C A C G T T A C G
C T G A C A G T C T G A A G T C C T A G G A C T A T C G G T A C A C G T A C G T

BHLHE23/MA0817.1/Jaspar

Match Rank:8
Score:0.66
Offset:-2
Orientation:forward strand
Alignment:--AVACATGYTS
AAACATATGTTT
 A C G T A C G T G T C A T A G C T C G A G A T C C T G A G C A T T A C G A G T C A C G T T A C G
C G T A T C G A T G C A G T A C C T G A A G C T T G C A G A C T A C T G A C G T G A C T C G A T

NEUROG2/MA0669.1/Jaspar

Match Rank:9
Score:0.66
Offset:-1
Orientation:reverse strand
Alignment:-AVACATGYTS
GACATATGTT-
 A C G T G T C A T A G C T C G A G A T C C T G A G C A T T A C G A G T C A C G T T A C G
C T A G T C G A A G T C C G T A A C G T T G C A A G C T C T A G A C G T A G C T A C G T

Max(bHLH)/K562-Max-ChIP-Seq(GSE31477)/Homer

Match Rank:10
Score:0.65
Offset:-1
Orientation:forward strand
Alignment:-AVACATGYTS-
ACCACGTGGTNN
 A C G T G T C A T A G C T C G A G A T C C T G A G C A T T A C G A G T C A C G T T A C G A C G T
T C G A T G A C A G T C C G T A A G T C C T A G A C G T A C T G A C T G A G C T A G T C G C A T