Information for 9-AGKCTYGTCY (Motif 19)

C G T A A C T G A C T G G T A C C A G T G A T C A T C G A C G T G T A C A G C T
Reverse Opposite:
C T G A A C T G C G T A A T G C C T A G G T C A A C T G G T A C A G T C G C A T
p-value:1e-9
log p-value:-2.086e+01
Information Content per bp:1.702
Number of Target Sequences with motif32.0
Percentage of Target Sequences with motif4.41%
Number of Background Sequences with motif555.2
Percentage of Background Sequences with motif1.21%
Average Position of motif in Targets40.4 +/- 27.1bp
Average Position of motif in Background50.0 +/- 31.3bp
Strand Bias (log2 ratio + to - strand density)1.4
Multiplicity (# of sites on avg that occur together)1.04
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

PB0180.1_Sp4_2/Jaspar

Match Rank:1
Score:0.62
Offset:-3
Orientation:forward strand
Alignment:---AGKCTYGTCY--
CAAAGGCGTGGCCAG
 A C G T A C G T A C G T C G T A A C T G A C T G G T A C C A G T G A T C A T C G A C G T G T A C A G C T A C G T A C G T
A G T C C G T A C G T A T C G A A T C G A C T G G T A C A C T G A C G T C T A G A C T G G A T C G A T C G T C A C A T G

SD0002.1_at_AC_acceptor/Jaspar

Match Rank:2
Score:0.61
Offset:-1
Orientation:forward strand
Alignment:-AGKCTYGTCY
AAGGCAAGTGT
 A C G T C G T A A C T G A C T G G T A C C A G T G A T C A T C G A C G T G T A C A G C T
T G C A C G T A C T A G A C T G A G T C T C G A C T G A T A C G A C G T C T A G A G C T

Smad4(MAD)/ESC-SMAD4-ChIP-Seq(GSE29422)/Homer

Match Rank:3
Score:0.58
Offset:2
Orientation:forward strand
Alignment:AGKCTYGTCY--
--VBSYGTCTGG
 C G T A A C T G A C T G G T A C C A G T G A T C A T C G A C G T G T A C A G C T A C G T A C G T
A C G T A C G T T A C G A T C G T A G C G A T C A C T G A C G T A G T C A C G T C T A G A T C G

HIF-1a(bHLH)/MCF7-HIF1a-ChIP-Seq(GSE28352)/Homer

Match Rank:4
Score:0.58
Offset:1
Orientation:reverse strand
Alignment:AGKCTYGTCY
-BGCACGTA-
 C G T A A C T G A C T G G T A C C A G T G A T C A T C G A C G T G T A C A G C T
A C G T A T C G C A T G A G T C C T G A T A G C C T A G A G C T T G C A A C G T

HIF2a(bHLH)/785_O-HIF2a-ChIP-Seq(GSE34871)/Homer

Match Rank:5
Score:0.57
Offset:2
Orientation:forward strand
Alignment:AGKCTYGTCY--
--GCACGTACCC
 C G T A A C T G A C T G G T A C C A G T G A T C A T C G A C G T G T A C A G C T A C G T A C G T
A C G T A C G T C A T G A G T C C T G A T G A C A T C G G A C T G T C A A G T C T A G C G A T C

PB0203.1_Zfp691_2/Jaspar

Match Rank:6
Score:0.56
Offset:-8
Orientation:reverse strand
Alignment:--------AGKCTYGTCY
NTNNNAGGAGTCTCNTN-
 A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T C G T A A C T G A C T G G T A C C A G T G A T C A T C G A C G T G T A C A G C T
A T C G C A G T A C G T G C T A C T A G C T G A A C T G A C T G C G T A A T C G A G C T G T A C G C A T T G A C T A C G G A C T G T C A A C G T

PB0060.1_Smad3_1/Jaspar

Match Rank:7
Score:0.56
Offset:0
Orientation:reverse strand
Alignment:AGKCTYGTCY-------
NNTNNTGTCTGGNNTNG
 C G T A A C T G A C T G G T A C C A G T G A T C A T C G A C G T G T A C A G C T A C G T A C G T A C G T A C G T A C G T A C G T A C G T
C A G T A T C G C G A T T C A G T G C A G A C T A C T G C A G T A G T C A C G T T C A G T C A G G C T A G C A T C G A T G A C T C A T G

HIF-1b(HLH)/T47D-HIF1b-ChIP-Seq(GSE59937)/Homer

Match Rank:8
Score:0.56
Offset:2
Orientation:reverse strand
Alignment:AGKCTYGTCY
--GCACGTAY
 C G T A A C T G A C T G G T A C C A G T G A T C A T C G A C G T G T A C A G C T
A C G T A C G T C A T G T A G C C T G A G A T C C T A G G A C T G T C A A G C T

Smad2(MAD)/ES-SMAD2-ChIP-Seq(GSE29422)/Homer

Match Rank:9
Score:0.55
Offset:4
Orientation:forward strand
Alignment:AGKCTYGTCY--
----CTGTCTGG
 C G T A A C T G A C T G G T A C C A G T G A T C A T C G A C G T G T A C A G C T A C G T A C G T
A C G T A C G T A C G T A C G T A T G C G A C T A C T G C A G T G A T C A C G T T A C G T A C G

HES5/MA0821.1/Jaspar

Match Rank:10
Score:0.55
Offset:0
Orientation:reverse strand
Alignment:AGKCTYGTCY--
TGGCACGTGCCG
 C G T A A C T G A C T G G T A C C A G T G A T C A T C G A C G T G T A C A G C T A C G T A C G T
G A C T T C A G T C A G A G T C C T G A A G T C C A T G A G C T A C T G A G T C A G T C C T A G