Information for 3-SGGCCAGSSGGGSKSM (Motif 9)

A T C G A C T G A C T G A G T C A G T C C G T A A C T G A T C G A T G C A C T G A C T G A T C G A T G C A C G T A T C G G T C A
Reverse Opposite:
A C G T A T G C G T C A A T C G A T G C A G T C A G T C A T C G A T G C A G T C A C G T A C T G A C T G A G T C A G T C T A G C
p-value:1e-10
log p-value:-2.523e+01
Information Content per bp:1.833
Number of Target Sequences with motif5.0
Percentage of Target Sequences with motif0.65%
Number of Background Sequences with motif1.2
Percentage of Background Sequences with motif0.00%
Average Position of motif in Targets57.6 +/- 18.9bp
Average Position of motif in Background51.9 +/- 15.6bp
Strand Bias (log2 ratio + to - strand density)10.0
Multiplicity (# of sites on avg that occur together)1.40
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

PLAG1/MA0163.1/Jaspar

Match Rank:1
Score:0.61
Offset:-1
Orientation:forward strand
Alignment:-SGGCCAGSSGGGSKSM
GGGGCCCAAGGGGG---
 A C G T A T C G A C T G A C T G A G T C A G T C C G T A A C T G A T C G A T G C A C T G A C T G A T C G A T G C A C G T A T C G G T C A
A C T G C T A G A C T G A C T G A T G C A G T C G T A C C G T A T G C A C A T G A C T G A C T G A C T G C T A G A C G T A C G T A C G T

Zic3(Zf)/mES-Zic3-ChIP-Seq(GSE37889)/Homer

Match Rank:2
Score:0.60
Offset:1
Orientation:reverse strand
Alignment:SGGCCAGSSGGGSKSM
-DCHCAGCAGGRGGCC
 A T C G A C T G A C T G A G T C A G T C C G T A A C T G A T C G A T G C A C T G A C T G A T C G A T G C A C G T A T C G G T C A
A C G T C A T G T G A C G T C A A T G C G C T A T A C G A G T C C T G A C A T G A T C G C T A G C T A G A T C G A T G C G T A C

TFAP2A(var.3)/MA0872.1/Jaspar

Match Rank:3
Score:0.59
Offset:1
Orientation:forward strand
Alignment:SGGCCAGSSGGGSKSM
-TGCCCTGAGGGCA--
 A T C G A C T G A C T G A G T C A G T C C G T A A C T G A T C G A T G C A C T G A C T G A T C G A T G C A C G T A T C G G T C A
A C G T G C A T A T C G A G T C A G T C A G T C A G C T A T C G T C G A T C A G A C T G A C T G A T G C C G T A A C G T A C G T

TFAP2B(var.3)/MA0813.1/Jaspar

Match Rank:4
Score:0.59
Offset:1
Orientation:reverse strand
Alignment:SGGCCAGSSGGGSKSM
-TGCCCTNAGGGCA--
 A T C G A C T G A C T G A G T C A G T C C G T A A C T G A T C G A T G C A C T G A C T G A T C G A T G C A C G T A T C G G T C A
A C G T G C A T A T C G A G T C A G T C A G T C A G C T T G A C T C G A T C A G A C T G A C T G A T G C C G T A A C G T A C G T

TFAP2C(var.3)/MA0815.1/Jaspar

Match Rank:5
Score:0.58
Offset:1
Orientation:forward strand
Alignment:SGGCCAGSSGGGSKSM
-TGCCCTGAGGGCA--
 A T C G A C T G A C T G A G T C A G T C C G T A A C T G A T C G A T G C A C T G A C T G A T C G A T G C A C G T A T C G G T C A
A C G T G C A T A T C G A G T C A G T C A G T C A G C T A T C G T C G A T C A G A C T G A C T G A T G C C G T A A C G T A C G T

CTCF/MA0139.1/Jaspar

Match Rank:6
Score:0.56
Offset:0
Orientation:forward strand
Alignment:SGGCCAGSSGGGSKSM---
TGGCCACCAGGGGGCGCTA
 A T C G A C T G A C T G A G T C A G T C C G T A A C T G A T C G A T G C A C T G A C T G A T C G A T G C A C G T A T C G G T C A A C G T A C G T A C G T
G A C T C A T G C T A G G T A C G T A C C G T A T A G C G A T C C T G A C T A G C T A G C A T G C T A G C A T G G T A C C T A G T A G C G A C T T C G A

ZIC4/MA0751.1/Jaspar

Match Rank:7
Score:0.56
Offset:1
Orientation:reverse strand
Alignment:SGGCCAGSSGGGSKSM
-NCNCAGCGGGGGGTC
 A T C G A C T G A C T G A G T C A G T C C G T A A C T G A T C G A T G C A C T G A C T G A T C G A T G C A C G T A T C G G T C A
A C G T C A T G T G A C C T G A G A T C G T C A T C A G G A T C C T A G C A T G C A T G C A T G C A T G C A T G A G C T T G A C

BORIS(Zf)/K562-CTCFL-ChIP-Seq(GSE32465)/Homer

Match Rank:8
Score:0.55
Offset:2
Orientation:reverse strand
Alignment:SGGCCAGSSGGGSKSM------
--GCCASCAGGGGGCGCYVNNG
 A T C G A C T G A C T G A G T C A G T C C G T A A C T G A T C G A T G C A C T G A C T G A T C G A T G C A C G T A T C G G T C A A C G T A C G T A C G T A C G T A C G T A C G T
A C G T A C G T C T A G T A G C A G T C C G T A T A G C G A T C C G T A A C T G C T A G C A T G A C T G A C T G G T A C C T A G A T G C G A T C T C A G A C T G T C A G A T C G

THRa(NR)/C17.2-THRa-ChIP-Seq(GSE38347)/Homer

Match Rank:9
Score:0.55
Offset:1
Orientation:forward strand
Alignment:SGGCCAGSSGGGSKSM
-GGTCANYTGAGGWCA
 A T C G A C T G A C T G A G T C A G T C C G T A A C T G A T C G A T G C A C T G A C T G A T C G A T G C A C G T A T C G G T C A
A C G T C T A G C A T G A C G T A G T C G C T A A G C T A G T C A G C T T C A G C T G A A C T G C A T G G C A T A T G C C G T A

ZIC3/MA0697.1/Jaspar

Match Rank:10
Score:0.55
Offset:1
Orientation:reverse strand
Alignment:SGGCCAGSSGGGSKSM
-NCGCAGCGGGGGGTC
 A T C G A C T G A C T G A G T C A G T C C G T A A C T G A T C G A T G C A C T G A C T G A T C G A T G C A C G T A T C G G T C A
A C G T C A T G G T A C C T A G G A T C T G C A T C A G A G T C C T A G A C T G A C T G C A T G C A T G C A T G A G C T T G A C