Information for 10-TCRGTTAATGTCC (Motif 27)

A C G T G T A C T C G A A C T G A C G T A C G T C G T A C G T A A C G T A T C G A C G T A G T C G T A C
Reverse Opposite:
A C T G A C T G C G T A A T G C C G T A A C G T A C G T C G T A G T C A A G T C A G C T A C T G C G T A
p-value:1e-8
log p-value:-1.976e+01
Information Content per bp:1.867
Number of Target Sequences with motif4.0
Percentage of Target Sequences with motif0.52%
Number of Background Sequences with motif1.0
Percentage of Background Sequences with motif0.00%
Average Position of motif in Targets36.2 +/- 26.4bp
Average Position of motif in Background43.0 +/- 0.0bp
Strand Bias (log2 ratio + to - strand density)10.0
Multiplicity (# of sites on avg that occur together)1.50
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

PH0073.1_Hoxc9/Jaspar

Match Rank:1
Score:0.66
Offset:0
Orientation:reverse strand
Alignment:TCRGTTAATGTCC---
NNAATTAATGACCNNN
 A C G T G T A C T C G A A C T G A C G T A C G T C G T A C G T A A C G T A T C G A C G T A G T C G T A C A C G T A C G T A C G T
T G C A G C A T C T G A C T G A C G A T A C G T C G T A C G T A A G C T A C T G C T G A A G T C G A T C A G C T G T A C A G T C

PH0123.1_Obox3/Jaspar

Match Rank:2
Score:0.65
Offset:0
Orientation:reverse strand
Alignment:TCRGTTAATGTCC----
ATAGTTAATCCCCCNNA
 A C G T G T A C T C G A A C T G A C G T A C G T C G T A C G T A A C G T A T C G A C G T A G T C G T A C A C G T A C G T A C G T A C G T
C T G A C A G T G C T A C A T G G C A T G C A T C G T A G T C A C A G T G T A C G A T C G A T C G A T C A T G C A G C T T A G C C G T A

Nanog(Homeobox)/mES-Nanog-ChIP-Seq(GSE11724)/Homer

Match Rank:3
Score:0.64
Offset:3
Orientation:reverse strand
Alignment:TCRGTTAATGTCC
---GTTAATGGCC
 A C G T G T A C T C G A A C T G A C G T A C G T C G T A C G T A A C G T A T C G A C G T A G T C G T A C
A C G T A C G T A C G T A T C G A G C T C A G T T C G A C T G A C G A T C A T G C T A G A T G C G A T C

PH0015.1_Crx/Jaspar

Match Rank:4
Score:0.64
Offset:1
Orientation:reverse strand
Alignment:TCRGTTAATGTCC----
-AGGCTAATCCCCAANG
 A C G T G T A C T C G A A C T G A C G T A C G T C G T A C G T A A C G T A T C G A C G T A G T C G T A C A C G T A C G T A C G T A C G T
A C G T G T C A T A C G T C A G G A T C C G A T C G T A C G T A A C G T A G T C A G T C A T G C A T G C G C T A G C T A T G A C T C A G

PH0121.1_Obox1/Jaspar

Match Rank:5
Score:0.63
Offset:0
Orientation:reverse strand
Alignment:TCRGTTAATGTCC----
NTAGTTAATCCCCTTAN
 A C G T G T A C T C G A A C T G A C G T A C G T C G T A C G T A A C G T A T C G A C G T A G T C G T A C A C G T A C G T A C G T A C G T
C T A G C G A T G C T A A C T G G C A T C G A T C G T A C T G A A C G T G T A C A G T C G A T C G A T C A G C T A G C T G C T A G C T A

PH0122.1_Obox2/Jaspar

Match Rank:6
Score:0.62
Offset:0
Orientation:reverse strand
Alignment:TCRGTTAATGTCC----
ATAGTTAATCCCCCTCA
 A C G T G T A C T C G A A C T G A C G T A C G T C G T A C G T A A C G T A T C G A C G T A G T C G T A C A C G T A C G T A C G T A C G T
C T G A C A G T G C T A C A T G G C A T G C A T C G T A G C T A C A G T G T A C A G T C G A T C G A T C G A T C A G C T T G A C G C T A

Nkx6.1(Homeobox)/Islet-Nkx6.1-ChIP-Seq(GSE40975)/Homer

Match Rank:7
Score:0.61
Offset:3
Orientation:forward strand
Alignment:TCRGTTAATGTCC
---GKTAATGR--
 A C G T G T A C T C G A A C T G A C G T A C G T C G T A C G T A A C G T A T C G A C G T A G T C G T A C
A C G T A C G T A C G T A C T G C A G T A C G T C G T A C G T A A C G T A C T G C T G A A C G T A C G T

PH0139.1_Pitx3/Jaspar

Match Rank:8
Score:0.61
Offset:-1
Orientation:reverse strand
Alignment:-TCRGTTAATGTCC--
GNNAGCTAATCCCCCN
 A C G T A C G T G T A C T C G A A C T G A C G T A C G T C G T A C G T A A C G T A T C G A C G T A G T C G T A C A C G T A C G T
A T C G T A C G G A T C G T C A T A C G G T A C C G A T C G T A C T G A A C G T A G T C A G T C G A T C A T G C A G T C A G C T

PH0167.1_Tcf1/Jaspar

Match Rank:9
Score:0.61
Offset:-3
Orientation:reverse strand
Alignment:---TCRGTTAATGTCC-
NTTTTAGTTAACNNAGN
 A C G T A C G T A C G T A C G T G T A C T C G A A C T G A C G T A C G T C G T A C G T A A C G T A T C G A C G T A G T C G T A C A C G T
T G C A G A C T G C A T A C G T G A C T C T G A A T C G G C A T C G A T C G T A C T G A T A G C A G C T T C G A T G C A T A C G C T A G

GSC(Homeobox)/FrogEmbryos-GSC-ChIP-Seq(DRA000576)/Homer

Match Rank:10
Score:0.61
Offset:4
Orientation:reverse strand
Alignment:TCRGTTAATGTCC
----YTAATCCY-
 A C G T G T A C T C G A A C T G A C G T A C G T C G T A C G T A A C G T A T C G A C G T A G T C G T A C
A C G T A C G T A C G T A C G T G A T C G C A T C G T A C G T A A C G T G A T C G A T C A G T C A C G T