Information for 9-GGTGMCAGAAACC (Motif 5)

C T A G T A C G C G A T T A C G T G C A T A G C C T G A T A C G G T C A T G C A C T G A A G T C A G T C
Reverse Opposite:
T C A G C T A G G A C T A C G T A C G T A G T C G A C T A T C G A C G T A T G C G C T A A T G C A G T C
p-value:1e-12
log p-value:-2.981e+01
Information Content per bp:1.712
Number of Target Sequences with motif20.0
Percentage of Target Sequences with motif2.26%
Number of Background Sequences with motif113.9
Percentage of Background Sequences with motif0.24%
Average Position of motif in Targets47.1 +/- 27.3bp
Average Position of motif in Background48.6 +/- 27.0bp
Strand Bias (log2 ratio + to - strand density)0.3
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

SMAD2::SMAD3::SMAD4/MA0513.1/Jaspar

Match Rank:1
Score:0.66
Offset:-1
Orientation:reverse strand
Alignment:-GGTGMCAGAAACC
AGGTGNCAGACAG-
 A C G T C T A G T A C G C G A T T A C G T G C A T A G C C T G A T A C G G T C A T G C A C T G A A G T C A G T C
C T G A C T A G A T C G C G A T A T C G G T C A A T G C C G T A A C T G T G C A A G T C C G T A A T C G A C G T

Tbox:Smad(T-box,MAD)/ESCd5-Smad2_3-ChIP-Seq(GSE29422)/Homer

Match Rank:2
Score:0.66
Offset:-1
Orientation:forward strand
Alignment:-GGTGMCAGAAACC
AGGTGHCAGACA--
 A C G T C T A G T A C G C G A T T A C G T G C A T A G C C T G A T A C G G T C A T G C A C T G A A G T C A G T C
C T G A C T A G A T C G G C A T A C T G G T A C A T G C C G T A A C T G G C T A A G T C C G T A A C G T A C G T

IRF4(IRF)/GM12878-IRF4-ChIP-Seq(GSE32465)/Homer

Match Rank:3
Score:0.65
Offset:4
Orientation:forward strand
Alignment:GGTGMCAGAAACC-
----ACTGAAACCA
 C T A G T A C G C G A T T A C G T G C A T A G C C T G A T A C G G T C A T G C A C T G A A G T C A G T C A C G T
A C G T A C G T A C G T A C G T G C T A T A G C A G C T A T C G G T C A C G T A G C T A A T G C G A T C C T G A

PB0036.1_Irf6_1/Jaspar

Match Rank:4
Score:0.60
Offset:1
Orientation:forward strand
Alignment:GGTGMCAGAAACC-----
-CTGATCGAAACCAAAGT
 C T A G T A C G C G A T T A C G T G C A T A G C C T G A T A C G G T C A T G C A C T G A A G T C A G T C A C G T A C G T A C G T A C G T A C G T
A C G T G T A C C G A T C A T G C T G A G A C T G A T C C T A G T C G A C G T A C G T A T A G C A G T C T C G A T G C A C G T A C A T G C G A T

STAT1::STAT2/MA0517.1/Jaspar

Match Rank:5
Score:0.59
Offset:0
Orientation:reverse strand
Alignment:GGTGMCAGAAACC--
GGAAANTGAAACTNA
 C T A G T A C G C G A T T A C G T G C A T A G C C T G A T A C G G T C A T G C A C T G A A G T C A G T C A C G T A C G T
T C A G C T A G C T G A C G T A T C G A T G C A G A C T C T A G T C G A C G T A C T G A A T G C G A C T C T A G G T C A

PB0035.1_Irf5_1/Jaspar

Match Rank:6
Score:0.57
Offset:0
Orientation:forward strand
Alignment:GGTGMCAGAAACC--
ATAAACCGAAACCAA
 C T A G T A C G C G A T T A C G T G C A T A G C C T G A T A C G G T C A T G C A C T G A A G T C A G T C A C G T A C G T
C G T A C G A T C T G A C G T A C T G A G A T C G A T C C T A G C T G A C G T A C G T A T A G C G A T C C T G A T C G A

ISRE(IRF)/ThioMac-LPS-Expression(GSE23622)/Homer

Match Rank:7
Score:0.56
Offset:1
Orientation:reverse strand
Alignment:GGTGMCAGAAACC
-GAAACTGAAACT
 C T A G T A C G C G A T T A C G T G C A T A G C C T G A T A C G G T C A T G C A C T G A A G T C A G T C
A C G T T C A G C T G A G T C A C G T A A T G C G A C T A T C G G T C A C T G A C T G A T A G C G A C T

PB0034.1_Irf4_1/Jaspar

Match Rank:8
Score:0.56
Offset:1
Orientation:forward strand
Alignment:GGTGMCAGAAACC---
-CGTATCGAAACCAAA
 C T A G T A C G C G A T T A C G T G C A T A G C C T G A T A C G G T C A T G C A C T G A A G T C A G T C A C G T A C G T A C G T
A C G T T G A C C T A G C G A T C G T A G A C T A G T C C T A G T C G A C G T A C G T A T A G C G A T C C T G A G T C A C G T A

PB0033.1_Irf3_1/Jaspar

Match Rank:9
Score:0.54
Offset:0
Orientation:forward strand
Alignment:GGTGMCAGAAACC-
GAGAACCGAAACTG
 C T A G T A C G C G A T T A C G T G C A T A G C C T G A T A C G G T C A T G C A C T G A A G T C A G T C A C G T
A C T G C T G A C T A G C G T A G C T A G T A C T A G C C T A G T C G A G C T A G C T A A T G C G A C T C T A G

IRF3(IRF)/BMDM-Irf3-ChIP-Seq(GSE67343)/Homer

Match Rank:10
Score:0.54
Offset:1
Orientation:reverse strand
Alignment:GGTGMCAGAAACC
-GAAAMTGAAACT
 C T A G T A C G C G A T T A C G T G C A T A G C C T G A T A C G G T C A T G C A C T G A A G T C A G T C
A C G T C T A G T C G A C T G A G T C A T G A C A G C T T C A G T C G A C T G A C G T A A T G C G A C T