Information for 24-GGGAGAAAADGGGGHB (Motif 52)

C T A G A C T G C T A G C G T A T C A G C T G A G T C A C G T A C G T A C A G T C A T G C T A G A C T G C A T G G A C T A C G T
Reverse Opposite:
T C G A C G T A G T A C G T A C A G T C G T A C G C T A C G A T A C G T A C G T A G C T A G T C C G A T A G T C G T A C A G T C
p-value:1e-2
log p-value:-5.997e+00
Information Content per bp:1.688
Number of Target Sequences with motif1.0
Percentage of Target Sequences with motif7.14%
Number of Background Sequences with motif8.1
Percentage of Background Sequences with motif0.02%
Average Position of motif in Targets21.0 +/- 0.0bp
Average Position of motif in Background50.6 +/- 31.5bp
Strand Bias (log2 ratio + to - strand density)10.0
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

PB0132.1_Hbp1_2/Jaspar

Match Rank:1
Score:0.58
Offset:0
Orientation:reverse strand
Alignment:GGGAGAAAADGGGGHB-
NNTNNACAATGGGANNN
 C T A G A C T G C T A G C G T A T C A G C T G A G T C A C G T A C G T A C A G T C A T G C T A G A C T G C A T G G A C T A C G T A C G T
C G T A T A C G A G C T C G T A A G T C G T C A G T A C C G T A C G T A C G A T C T A G C T A G A C T G T C G A G T C A G A T C G C T A

Sox2/MA0143.3/Jaspar

Match Rank:2
Score:0.56
Offset:4
Orientation:reverse strand
Alignment:GGGAGAAAADGGGGHB
----AACAAAGG----
 C T A G A C T G C T A G C G T A T C A G C T G A G T C A C G T A C G T A C A G T C A T G C T A G A C T G C A T G G A C T A C G T
A C G T A C G T A C G T A C G T T C G A C G T A A G T C C G T A C G T A C G T A A C T G A C T G A C G T A C G T A C G T A C G T

PLAG1/MA0163.1/Jaspar

Match Rank:3
Score:0.55
Offset:0
Orientation:forward strand
Alignment:GGGAGAAAADGGGGHB
GGGGCCCAAGGGGG--
 C T A G A C T G C T A G C G T A T C A G C T G A G T C A C G T A C G T A C A G T C A T G C T A G A C T G C A T G G A C T A C G T
A C T G C T A G A C T G A C T G A T G C A G T C G T A C C G T A T G C A C A T G A C T G A C T G A C T G C T A G A C G T A C G T

Sox6/MA0515.1/Jaspar

Match Rank:4
Score:0.55
Offset:2
Orientation:reverse strand
Alignment:GGGAGAAAADGGGGHB
--AAAACAATGG----
 C T A G A C T G C T A G C G T A T C A G C T G A G T C A C G T A C G T A C A G T C A T G C T A G A C T G C A T G G A C T A C G T
A C G T A C G T T C G A C T G A T C G A C G T A A G T C C G T A C G T A C G A T C T A G T C A G A C G T A C G T A C G T A C G T

Sox3(HMG)/NPC-Sox3-ChIP-Seq(GSE33059)/Homer

Match Rank:5
Score:0.55
Offset:4
Orientation:reverse strand
Alignment:GGGAGAAAADGGGGHB
----RACAAWGG----
 C T A G A C T G C T A G C G T A T C A G C T G A G T C A C G T A C G T A C A G T C A T G C T A G A C T G C A T G G A C T A C G T
A C G T A C G T A C G T A C G T T C G A G T C A T G A C C G T A C G T A C G T A C T A G T A C G A C G T A C G T A C G T A C G T

Sox3/MA0514.1/Jaspar

Match Rank:6
Score:0.55
Offset:2
Orientation:reverse strand
Alignment:GGGAGAAAADGGGGHB
--AAAACAAAGG----
 C T A G A C T G C T A G C G T A T C A G C T G A G T C A C G T A C G T A C A G T C A T G C T A G A C T G C A T G G A C T A C G T
A C G T A C G T T C G A T C G A T C G A C G T A A T G C C G T A C G T A C G T A C T A G T A C G A C G T A C G T A C G T A C G T

PB0124.1_Gabpa_2/Jaspar

Match Rank:7
Score:0.54
Offset:-3
Orientation:reverse strand
Alignment:---GGGAGAAAADGGGGHB
NNNNGGGGGAAGANGG---
 A C G T A C G T A C G T C T A G A C T G C T A G C G T A T C A G C T G A G T C A C G T A C G T A C A G T C A T G C T A G A C T G C A T G G A C T A C G T
C T A G A C G T A T C G T C G A C T A G C A T G T A C G C T A G C T A G C T G A C G T A C T A G T G C A G A T C C T A G A C T G A C G T A C G T A C G T

PB0128.1_Gcm1_2/Jaspar

Match Rank:8
Score:0.53
Offset:2
Orientation:forward strand
Alignment:GGGAGAAAADGGGGHB---
--TGCGCATAGGGGAGGAG
 C T A G A C T G C T A G C G T A T C A G C T G A G T C A C G T A C G T A C A G T C A T G C T A G A C T G C A T G G A C T A C G T A C G T A C G T A C G T
A C G T A C G T C G A T C A T G A T G C T A C G G T A C T C G A A G C T T C G A C A T G A C T G A C T G A C T G T C G A A T C G T C A G G T C A A C T G

PB0192.1_Tcfap2e_2/Jaspar

Match Rank:9
Score:0.53
Offset:-3
Orientation:forward strand
Alignment:---GGGAGAAAADGGGGHB
TACTGGAAAAAAAA-----
 A C G T A C G T A C G T C T A G A C T G C T A G C G T A T C A G C T G A G T C A C G T A C G T A C A G T C A T G C T A G A C T G C A T G G A C T A C G T
G C A T C T G A T G A C C A G T A C G T T C A G C G T A C G T A T C G A T C G A G C T A G T C A C G T A C T G A A C G T A C G T A C G T A C G T A C G T

Sox2(HMG)/mES-Sox2-ChIP-Seq(GSE11431)/Homer

Match Rank:10
Score:0.53
Offset:3
Orientation:reverse strand
Alignment:GGGAGAAAADGGGGHB
---GAACAATGGN---
 C T A G A C T G C T A G C G T A T C A G C T G A G T C A C G T A C G T A C A G T C A T G C T A G A C T G C A T G G A C T A C G T
A C G T A C G T A C G T C T A G T C G A C G T A A G T C C G T A C G T A C G A T C T A G T C A G T A C G A C G T A C G T A C G T