Information for 24-TGTCCGCGAT (Motif 50)

A C G T A C T G A C G T A G T C A G T C A C T G A G T C A C T G C G T A A C G T
Reverse Opposite:
C G T A A C G T A G T C A C T G A G T C A C T G A C T G C G T A A G T C C G T A
p-value:1e-3
log p-value:-7.382e+00
Information Content per bp:1.530
Number of Target Sequences with motif1.0
Percentage of Target Sequences with motif7.14%
Number of Background Sequences with motif2.3
Percentage of Background Sequences with motif0.01%
Average Position of motif in Targets77.0 +/- 0.0bp
Average Position of motif in Background79.0 +/- 0.0bp
Strand Bias (log2 ratio + to - strand density)10.0
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

HINFP/MA0131.2/Jaspar

Match Rank:1
Score:0.68
Offset:-3
Orientation:forward strand
Alignment:---TGTCCGCGAT
CAACGTCCGCGG-
 A C G T A C G T A C G T A C G T A C T G A C G T A G T C A G T C A C T G A G T C A C T G C G T A A C G T
A T G C T G C A T C G A A T G C A T C G A C G T A T G C A G T C A T C G A T G C C A T G A C T G A C G T

YY2/MA0748.1/Jaspar

Match Rank:2
Score:0.67
Offset:1
Orientation:forward strand
Alignment:TGTCCGCGAT--
-GTCCGCCATTA
 A C G T A C T G A C G T A G T C A G T C A C T G A G T C A C T G C G T A A C G T A C G T A C G T
A C G T C T A G C G A T G A T C A T G C T A C G T G A C A G T C C G T A C G A T G A C T C G T A

PB0140.1_Irf6_2/Jaspar

Match Rank:3
Score:0.57
Offset:-1
Orientation:reverse strand
Alignment:-TGTCCGCGAT----
NNNACCGAGAGTNNN
 A C G T A C G T A C T G A C G T A G T C A G T C A C T G A G T C A C T G C G T A A C G T A C G T A C G T A C G T A C G T
A T C G G A C T C A T G G T C A A G T C G A T C C T A G T C G A T A C G G T C A C A T G C G A T T C A G T A C G A C G T

RORA/MA0071.1/Jaspar

Match Rank:4
Score:0.56
Offset:0
Orientation:reverse strand
Alignment:TGTCCGCGAT
TGACCTTGAT
 A C G T A C T G A C G T A G T C A G T C A C T G A G T C A C T G C G T A A C G T
A C G T A C T G C G T A A G T C A G T C A G C T G C A T A C T G C G T A G C A T

Mafb/MA0117.2/Jaspar

Match Rank:5
Score:0.56
Offset:0
Orientation:reverse strand
Alignment:TGTCCGCGAT--
NGTCAGCANTTT
 A C G T A C T G A C G T A G T C A G T C A C T G A G T C A C T G C G T A A C G T A C G T A C G T
G T C A T A C G A G C T G T A C C T G A C A T G T A G C C T G A G C A T C G A T G C A T G C A T

PB0138.1_Irf4_2/Jaspar

Match Rank:6
Score:0.56
Offset:-1
Orientation:reverse strand
Alignment:-TGTCCGCGAT----
GNNACCGAGAATNNN
 A C G T A C G T A C T G A C G T A G T C A G T C A C T G A G T C A C T G C G T A A C G T A C G T A C G T A C G T A C G T
A T C G G T A C C T G A G C T A A G T C A G T C C A T G T C G A C A T G G C T A C T G A C G A T T C G A A T G C A G C T

PB0128.1_Gcm1_2/Jaspar

Match Rank:7
Score:0.56
Offset:-2
Orientation:reverse strand
Alignment:--TGTCCGCGAT-----
NTCNTCCCCTATNNGNN
 A C G T A C G T A C G T A C T G A C G T A G T C A G T C A C T G A G T C A C T G C G T A A C G T A C G T A C G T A C G T A C G T A C G T
T G A C C A G T A G T C T A G C A G C T A G T C T A G C G T A C G T A C A G C T C T G A A G C T C A T G A T G C T A C G G T A C G C T A

NRL/MA0842.1/Jaspar

Match Rank:8
Score:0.54
Offset:1
Orientation:reverse strand
Alignment:TGTCCGCGAT--
-GTCAGCANNTN
 A C G T A C T G A C G T A G T C A G T C A C T G A G T C A C T G C G T A A C G T A C G T A C G T
A C G T T C A G C G A T G T A C C G T A C A T G A G T C C T G A C G T A C G T A G C A T G C A T

Smad4(MAD)/ESC-SMAD4-ChIP-Seq(GSE29422)/Homer

Match Rank:9
Score:0.53
Offset:-3
Orientation:forward strand
Alignment:---TGTCCGCGAT
VBSYGTCTGG---
 A C G T A C G T A C G T A C G T A C T G A C G T A G T C A G T C A C T G A G T C A C T G C G T A A C G T
T A C G A T C G T A G C G A T C A C T G A C G T A G T C A C G T C T A G A T C G A C G T A C G T A C G T

MEIS1/MA0498.2/Jaspar

Match Rank:10
Score:0.53
Offset:-1
Orientation:reverse strand
Alignment:-TGTCCGCGAT
NTGTCAN----
 A C G T A C G T A C T G A C G T A G T C A G T C A C T G A G T C A C T G C G T A A C G T
G A T C G A C T C T A G A C G T A T G C C G T A C G T A A C G T A C G T A C G T A C G T