Information for 15-CTGAGGACAAAAT (Motif 35)

A G T C A C G T A C T G C G T A A C T G A C T G C G T A A G T C C G T A C G T A C G T A C G T A A C G T
Reverse Opposite:
C G T A A C G T A C G T A C G T A C G T A C T G A C G T A G T C A G T C A C G T A G T C C G T A A C T G
p-value:1e-3
log p-value:-8.075e+00
Information Content per bp:1.530
Number of Target Sequences with motif1.0
Percentage of Target Sequences with motif7.14%
Number of Background Sequences with motif0.5
Percentage of Background Sequences with motif0.00%
Average Position of motif in Targets37.0 +/- 0.0bp
Average Position of motif in Background85.0 +/- 0.0bp
Strand Bias (log2 ratio + to - strand density)10.0
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

ZNF675(Zf)/HEK293-ZNF675.GFP-ChIP-Seq(GSE58341)/Homer

Match Rank:1
Score:0.74
Offset:0
Orientation:forward strand
Alignment:CTGAGGACAAAAT--
ARGAGGMCAAAATGW
 A G T C A C G T A C T G C G T A A C T G A C T G C G T A A G T C C G T A C G T A C G T A C G T A A C G T A C G T A C G T
T G C A C T A G C T A G C T G A C A T G A C T G T G C A G A T C G T C A T G C A G T C A G T C A A G C T C T A G G C A T

THRb(NR)/Liver-NR1A2-ChIP-Seq(GSE52613)/Homer

Match Rank:2
Score:0.63
Offset:1
Orientation:forward strand
Alignment:CTGAGGACAAAAT
-TRAGGTCA----
 A G T C A C G T A C T G C G T A A C T G A C T G C G T A A G T C C G T A C G T A C G T A C G T A A C G T
A C G T G C A T T C A G C T G A A T C G A C T G C G A T G A T C C T G A A C G T A C G T A C G T A C G T

PB0032.1_IRC900814_1/Jaspar

Match Rank:3
Score:0.59
Offset:-1
Orientation:forward strand
Alignment:-CTGAGGACAAAAT--
ATTTACGACAAATAGC
 A C G T A G T C A C G T A C T G C G T A A C T G A C T G C G T A A G T C C G T A C G T A C G T A C G T A A C G T A C G T A C G T
C G T A C G A T G A C T A G C T G C T A A G T C A C T G C T G A T G A C C T G A C G T A G C T A G C A T C G T A C T A G A G T C

THRa(NR)/C17.2-THRa-ChIP-Seq(GSE38347)/Homer

Match Rank:4
Score:0.57
Offset:-6
Orientation:forward strand
Alignment:------CTGAGGACAAAAT
GGTCANYTGAGGWCA----
 A C G T A C G T A C G T A C G T A C G T A C G T A G T C A C G T A C T G C G T A A C T G A C T G C G T A A G T C C G T A C G T A C G T A C G T A A C G T
C T A G C A T G A C G T A G T C G C T A A G C T A G T C A G C T T C A G C T G A A C T G C A T G G C A T A T G C C G T A A C G T A C G T A C G T A C G T

Sox3/MA0514.1/Jaspar

Match Rank:5
Score:0.56
Offset:3
Orientation:reverse strand
Alignment:CTGAGGACAAAAT
---AAAACAAAGG
 A G T C A C G T A C T G C G T A A C T G A C T G C G T A A G T C C G T A C G T A C G T A C G T A A C G T
A C G T A C G T A C G T T C G A T C G A T C G A C G T A A T G C C G T A C G T A C G T A C T A G T A C G

SA0002.1_at_AC_acceptor/Jaspar

Match Rank:6
Score:0.56
Offset:-3
Orientation:reverse strand
Alignment:---CTGAGGACAAAAT----
NNCCTGNAAAAAAAAAAAAA
 A C G T A C G T A C G T A G T C A C G T A C T G C G T A A C T G A C T G C G T A A G T C C G T A C G T A C G T A C G T A A C G T A C G T A C G T A C G T A C G T
G C T A C G T A A G T C A G T C A C G T C T A G C T G A C T G A C T G A C T G A C T G A T C G A T C G A T C G A T C G A C T G A C T G A C T G A T C G A C T G A

AP-2alpha(AP2)/Hela-AP2alpha-ChIP-Seq(GSE31477)/Homer

Match Rank:7
Score:0.55
Offset:-2
Orientation:reverse strand
Alignment:--CTGAGGACAAAAT
GCCTCAGGGCAT---
 A C G T A C G T A G T C A C G T A C T G C G T A A C T G A C T G C G T A A G T C C G T A C G T A C G T A C G T A A C G T
A T C G A G T C A G T C A G C T A T G C C T G A C T A G A C T G A T C G G T A C G C T A C G A T A C G T A C G T A C G T

SA0001.1_at_AC_acceptor/Jaspar

Match Rank:8
Score:0.55
Offset:-3
Orientation:reverse strand
Alignment:---CTGAGGACAAAAT----
NNCCTGNAAAAAAAAAAAAA
 A C G T A C G T A C G T A G T C A C G T A C T G C G T A A C T G A C T G C G T A A G T C C G T A C G T A C G T A C G T A A C G T A C G T A C G T A C G T A C G T
G C T A G C T A A G T C A G T C A C G T C T A G C T G A C T G A C T G A C T G A C T G A T C G A T C G A T C G A T C G A T C G A T C G A T C G A C T G A C T G A

Hnf4a/MA0114.3/Jaspar

Match Rank:9
Score:0.55
Offset:2
Orientation:forward strand
Alignment:CTGAGGACAAAAT-----
--GGGGTCAAAGTCCAAT
 A G T C A C G T A C T G C G T A A C T G A C T G C G T A A G T C C G T A C G T A C G T A C G T A A C G T A C G T A C G T A C G T A C G T A C G T
A C G T A C G T T C A G T C A G C T A G C A T G C A G T A G T C T C G A C T G A C T G A A C T G A C G T A G T C A G T C C T G A T C G A G A C T

RARA/MA0729.1/Jaspar

Match Rank:10
Score:0.54
Offset:2
Orientation:forward strand
Alignment:CTGAGGACAAAAT-------
--GAGGTCAAAAGGTCAATG
 A G T C A C G T A C T G C G T A A C T G A C T G C G T A A G T C C G T A C G T A C G T A C G T A A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T
A C G T A C G T C T A G T C G A A C T G C A T G A G C T T A G C C T G A C G T A C G T A T G C A A C T G A C T G C G A T A G T C C T G A G C T A C A G T A C T G