Information for 7-CCCTCTAGTG (Motif 5)

G T A C A G T C A G T C A C G T A T G C G A C T C T G A A T C G A G C T A C T G
Reverse Opposite:
A G T C C T G A A T G C A G C T C T G A A T C G C G T A A C T G C T A G C A T G
p-value:1e-11
log p-value:-2.620e+01
Information Content per bp:1.847
Number of Target Sequences with motif17.0
Percentage of Target Sequences with motif2.13%
Number of Background Sequences with motif103.4
Percentage of Background Sequences with motif0.21%
Average Position of motif in Targets44.8 +/- 24.0bp
Average Position of motif in Background50.7 +/- 28.6bp
Strand Bias (log2 ratio + to - strand density)0.7
Multiplicity (# of sites on avg that occur together)1.06
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

CTCF(Zf)/CD4+-CTCF-ChIP-Seq(Barski_et_al.)/Homer

Match Rank:1
Score:0.72
Offset:-6
Orientation:forward strand
Alignment:------CCCTCTAGTG----
ANAGTGCCACCTGGTGGCCA
 A C G T A C G T A C G T A C G T A C G T A C G T G T A C A G T C A G T C A C G T A T G C G A C T C T G A A T C G A G C T A C T G A C G T A C G T A C G T A C G T
T G C A A G C T C T G A A T C G G A C T C T A G G T A C G A T C G T C A A G T C G T A C G A C T C T A G A T C G G C A T C A T G C A T G G A T C G T A C C T G A

CTCF/MA0139.1/Jaspar

Match Rank:2
Score:0.71
Offset:-5
Orientation:reverse strand
Alignment:-----CCCTCTAGTG----
TAGCGCCCCCTGGTGGCCA
 A C G T A C G T A C G T A C G T A C G T G T A C A G T C A G T C A C G T A T G C G A C T C T G A A T C G A G C T A C T G A C G T A C G T A C G T A C G T
A G C T C T G A A T C G G A T C C A T G G T A C G A T C G T A C G A T C G A T C G A C T C T A G A T C G G C A T C A T G C A T G G A T C G T A C C T G A

BORIS(Zf)/K562-CTCFL-ChIP-Seq(GSE32465)/Homer

Match Rank:3
Score:0.70
Offset:-8
Orientation:forward strand
Alignment:--------CCCTCTAGTG--
CNNBRGCGCCCCCTGSTGGC
 A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T G T A C A G T C A G T C A C G T A T G C G A C T C T G A A T C G A G C T A C T G A C G T A C G T
T A G C A G T C T G A C A G T C C T A G A T C G A G T C C A T G T G A C A G T C G T A C A G T C A G T C G C A T C T A G A T C G G C A T A C T G A T C G G A T C

NKX2-8/MA0673.1/Jaspar

Match Rank:4
Score:0.65
Offset:2
Orientation:reverse strand
Alignment:CCCTCTAGTG-
--NTCAAGTGG
 G T A C A G T C A G T C A C G T A T G C G A C T C T G A A T C G A G C T A C T G A C G T
A C G T A C G T A G C T C G A T A T G C C T G A C T G A C T A G C A G T C T A G A T C G

Nkx2.2(Homeobox)/NPC-Nkx2.2-ChIP-Seq(GSE61673)/Homer

Match Rank:5
Score:0.63
Offset:2
Orientation:forward strand
Alignment:CCCTCTAGTG--
--BTBRAGTGSN
 G T A C A G T C A G T C A C G T A T G C G A C T C T G A A T C G A G C T A C T G A C G T A C G T
A C G T A C G T A T G C G A C T A G C T C T A G C G T A C T A G C G A T C T A G A T C G G A T C

Nkx2.1(Homeobox)/LungAC-Nkx2.1-ChIP-Seq(GSE43252)/Homer

Match Rank:6
Score:0.62
Offset:2
Orientation:reverse strand
Alignment:CCCTCTAGTG--
--CTYRAGTGSY
 G T A C A G T C A G T C A C G T A T G C G A C T C T G A A T C G A G C T A C T G A C G T A C G T
A C G T A C G T A T G C G C A T A G C T C T A G C G T A A C T G C G A T C T A G A T G C G A T C

PH0111.1_Nkx2-2/Jaspar

Match Rank:7
Score:0.62
Offset:-2
Orientation:reverse strand
Alignment:--CCCTCTAGTG-----
NANTTTCAAGTGGTTAN
 A C G T A C G T G T A C A G T C A G T C A C G T A T G C G A C T C T G A A T C G A G C T A C T G A C G T A C G T A C G T A C G T A C G T
G C T A T G C A G C A T G C A T A G C T G C A T A G T C C T G A C G T A A C T G C G A T C T A G A T C G G A C T A G C T G C T A C G A T

NKX2-3/MA0672.1/Jaspar

Match Rank:8
Score:0.62
Offset:2
Orientation:reverse strand
Alignment:CCCTCTAGTG--
--NTCAAGTGGN
 G T A C A G T C A G T C A C G T A T G C G A C T C T G A A T C G A G C T A C T G A C G T A C G T
A C G T A C G T A G C T G C A T A G T C C T G A G T C A A C T G C G A T C T A G A T C G A C G T

Nkx2-5(var.2)/MA0503.1/Jaspar

Match Rank:9
Score:0.58
Offset:-3
Orientation:forward strand
Alignment:---CCCTCTAGTG
AGCCACTCAAG--
 A C G T A C G T A C G T G T A C A G T C A G T C A C G T A T G C G A C T C T G A A T C G A G C T A C T G
C T G A C T A G T A G C A G T C G C T A A G T C A C G T A G T C G T C A C T G A T A C G A C G T A C G T

Bapx1(Homeobox)/VertebralCol-Bapx1-ChIP-Seq(GSE36672)/Homer

Match Rank:10
Score:0.56
Offset:3
Orientation:forward strand
Alignment:CCCTCTAGTG---
---TTRAGTGSYK
 G T A C A G T C A G T C A C G T A T G C G A C T C T G A A T C G A G C T A C T G A C G T A C G T A C G T
A C G T A C G T A C G T A G C T G A C T C T A G C G T A C A T G C G A T C T A G A T C G G A C T C A G T