Information for 9-TYAAATCATA (Motif 11)

C G A T A G C T C G T A C G T A C G T A C G A T G T A C C G T A A C G T C G T A
Reverse Opposite:
C G A T C G T A C G A T C A T G G C T A A C G T G C A T C G A T C T G A C G T A
p-value:1e-9
log p-value:-2.100e+01
Information Content per bp:1.691
Number of Target Sequences with motif24.0
Percentage of Target Sequences with motif3.00%
Number of Background Sequences with motif305.6
Percentage of Background Sequences with motif0.63%
Average Position of motif in Targets50.0 +/- 28.8bp
Average Position of motif in Background49.6 +/- 27.2bp
Strand Bias (log2 ratio + to - strand density)0.5
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

Hnf1(Homeobox)/Liver-Foxa2-Chip-Seq(GSE25694)/Homer

Match Rank:1
Score:0.65
Offset:-2
Orientation:forward strand
Alignment:--TYAAATCATA-
GGTTAAACATTAA
 A C G T A C G T C G A T A G C T C G T A C G T A C G T A C G A T G T A C C G T A A C G T C G T A A C G T
C T A G C T A G G C A T C G A T C T G A G T C A G C T A A T G C C G T A C A G T G A C T C G T A T G C A

PB0129.1_Glis2_2/Jaspar

Match Rank:2
Score:0.64
Offset:-2
Orientation:reverse strand
Alignment:--TYAAATCATA--
TCTTTANTAATANN
 A C G T A C G T C G A T A G C T C G T A C G T A C G T A C G A T G T A C C G T A A C G T C G T A A C G T A C G T
A G C T A G T C C A G T G C A T C G A T C G T A C G A T G A C T G T C A C G T A G A C T T G C A G C A T C G A T

LIN54/MA0619.1/Jaspar

Match Rank:3
Score:0.62
Offset:-3
Orientation:reverse strand
Alignment:---TYAAATCATA
NATTCAAAT----
 A C G T A C G T A C G T C G A T A G C T C G T A C G T A C G T A C G A T G T A C C G T A A C G T C G T A
C T G A C T G A A C G T A C G T A G T C C T G A C G T A C G T A G C A T A C G T A C G T A C G T A C G T

Arid3a/MA0151.1/Jaspar

Match Rank:4
Score:0.62
Offset:-1
Orientation:forward strand
Alignment:-TYAAATCATA
ATTAAA-----
 A C G T C G A T A G C T C G T A C G T A C G T A C G A T G T A C C G T A A C G T C G T A
C G T A A C G T G A C T C G T A C G T A C G T A A C G T A C G T A C G T A C G T A C G T

Chop(bZIP)/MEF-Chop-ChIP-Seq(GSE35681)/Homer

Match Rank:5
Score:0.59
Offset:-1
Orientation:forward strand
Alignment:-TYAAATCATA
ATTGCATCAT-
 A C G T C G A T A G C T C G T A C G T A C G T A C G A T G T A C C G T A A C G T C G T A
T C G A G C A T A C G T C T A G G T A C T C G A G C A T T G A C T C G A A C G T A C G T

JUN/MA0488.1/Jaspar

Match Rank:6
Score:0.57
Offset:-1
Orientation:reverse strand
Alignment:-TYAAATCATA--
ATGACATCATCNN
 A C G T C G A T A G C T C G T A C G T A C G T A C G A T G T A C C G T A A C G T C G T A A C G T A C G T
T C G A A C G T A C T G C T G A A T G C T G C A C G A T G T A C C G T A A G C T G A T C G C A T G C A T

Gfi1/MA0038.1/Jaspar

Match Rank:7
Score:0.57
Offset:1
Orientation:forward strand
Alignment:TYAAATCATA-
-CAAATCACTG
 C G A T A G C T C G T A C G T A C G T A C G A T G T A C C G T A A C G T C G T A A C G T
A C G T A G T C T G C A C G T A C G T A C A G T G T A C G C T A T A G C G C A T T A C G

Atf4(bZIP)/MEF-Atf4-ChIP-Seq(GSE35681)/Homer

Match Rank:8
Score:0.57
Offset:-1
Orientation:reverse strand
Alignment:-TYAAATCATA
ATTGCATCAK-
 A C G T C G A T A G C T C G T A C G T A C G T A C G A T G T A C C G T A A C G T C G T A
T C G A A C G T A C G T C T A G A G T C T C G A G C A T G T A C C T G A A C G T A C G T

CHR(?)/Hela-CellCycle-Expression/Homer

Match Rank:9
Score:0.57
Offset:-5
Orientation:forward strand
Alignment:-----TYAAATCATA
CGGTTTCAAA-----
 A C G T A C G T A C G T A C G T A C G T C G A T A G C T C G T A C G T A C G T A C G A T G T A C C G T A A C G T C G T A
T A G C T C A G C A T G G C A T A G C T C G A T A T G C C G T A C G T A G T C A A C G T A C G T A C G T A C G T A C G T

HLF(bZIP)/HSC-HLF.Flag-ChIP-Seq(GSE69817)/Homer

Match Rank:10
Score:0.57
Offset:-1
Orientation:reverse strand
Alignment:-TYAAATCATA
VTTRCATAAY-
 A C G T C G A T A G C T C G T A C G T A C G T A C G A T G T A C C G T A A C G T C G T A
T C A G G A C T A C G T C T G A G A T C T C G A G A C T G T C A C T G A A G T C A C G T