Information for 7-GCCKGGWGAMSCC (Motif 6)

A T C G A G T C A G T C C A G T A C T G A T C G C G T A A C T G C G T A G T A C A T C G A G T C A G T C
Reverse Opposite:
A C T G C T A G T A G C C A T G A C G T A G T C C G A T A T G C A G T C G T C A A C T G A C T G A T G C
p-value:1e-10
log p-value:-2.509e+01
Information Content per bp:1.863
Number of Target Sequences with motif5.0
Percentage of Target Sequences with motif0.62%
Number of Background Sequences with motif0.4
Percentage of Background Sequences with motif0.00%
Average Position of motif in Targets51.6 +/- 17.1bp
Average Position of motif in Background10.0 +/- 0.0bp
Strand Bias (log2 ratio + to - strand density)0.6
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

PB0158.1_Rfx3_2/Jaspar

Match Rank:1
Score:0.57
Offset:-6
Orientation:forward strand
Alignment:------GCCKGGWGAMSCC----
ACTGACCCTTGGTTACCACAAAG
 A C G T A C G T A C G T A C G T A C G T A C G T A T C G A G T C A G T C C A G T A C T G A T C G C G T A A C T G C G T A G T A C A T C G A G T C A G T C A C G T A C G T A C G T A C G T
T G C A A G T C A C G T A T C G G C T A A T G C T A C G A T G C G C A T C G A T T C A G A C T G C G A T C A G T C G T A G A T C T G A C T C G A T G A C T C G A T C G A C G T A A T C G

PB0057.1_Rxra_1/Jaspar

Match Rank:2
Score:0.56
Offset:1
Orientation:forward strand
Alignment:GCCKGGWGAMSCC-----
-TGTCGTGACCCCTTAAT
 A T C G A G T C A G T C C A G T A C T G A T C G C G T A A C T G C G T A G T A C A T C G A G T C A G T C A C G T A C G T A C G T A C G T A C G T
A C G T C A G T A T C G G A C T A G T C C A T G A G C T T C A G G T C A G T A C G T A C A G T C A G T C C G A T G A C T T C G A G T C A A G C T

PB0160.1_Rfxdc2_2/Jaspar

Match Rank:3
Score:0.55
Offset:-2
Orientation:forward strand
Alignment:--GCCKGGWGAMSCC--
CTACTTGGATACGGAAT
 A C G T A C G T A T C G A G T C A G T C C A G T A C T G A T C G C G T A A C T G C G T A G T A C A T C G A G T C A G T C A C G T A C G T
A T G C A C G T T C G A A T G C C A G T G A C T T C A G A C T G C G T A A C G T C G T A G A T C T A C G T A C G C G T A C G T A G C A T

ZNF165(Zf)/WHIM12-ZNF165-ChIP-Seq(GSE65937)/Homer

Match Rank:4
Score:0.55
Offset:-1
Orientation:reverse strand
Alignment:-GCCKGGWGAMSCC-
TGCCTGCGYCMCCTT
 A C G T A T C G A G T C A G T C C A G T A C T G A T C G C G T A A C T G C G T A G T A C A T C G A G T C A G T C A C G T
C A G T A C T G A G T C A G T C A C G T A C T G A T G C C T A G A G T C G A T C G T C A A G T C A G T C G C A T A C G T

MF0003.1_REL_class/Jaspar

Match Rank:5
Score:0.54
Offset:4
Orientation:reverse strand
Alignment:GCCKGGWGAMSCC-
----GGAAATCCCC
 A T C G A G T C A G T C C A G T A C T G A T C G C G T A A C T G C G T A G T A C A T C G A G T C A G T C A C G T
A C G T A C G T A C G T A C G T C A T G C T A G C T G A T C G A G C T A C G A T G A T C G T A C T G A C T A G C

PB0159.1_Rfx4_2/Jaspar

Match Rank:6
Score:0.54
Offset:-2
Orientation:forward strand
Alignment:--GCCKGGWGAMSCC
TACCCTAGTTACCGA
 A C G T A C G T A T C G A G T C A G T C C A G T A C T G A T C G C G T A A C T G C G T A G T A C A T C G A G T C A G T C
G C A T G T C A A T G C A T G C G T A C C A G T T C G A A C T G C G A T A C G T C G T A A G T C T A G C T A C G G T C A

REL/MA0101.1/Jaspar

Match Rank:7
Score:0.53
Offset:4
Orientation:reverse strand
Alignment:GCCKGGWGAMSCC-
----GGAAANCCCC
 A T C G A G T C A G T C C A G T A C T G A T C G C G T A A C T G C G T A G T A C A T C G A G T C A G T C A C G T
A C G T A C G T A C G T A C G T A C T G C T A G C G T A C G T A C G T A A C G T G A T C G A T C T A G C T A G C

RELA/MA0107.1/Jaspar

Match Rank:8
Score:0.53
Offset:4
Orientation:reverse strand
Alignment:GCCKGGWGAMSCC-
----GGAAATTCCC
 A T C G A G T C A G T C C A G T A C T G A T C G C G T A A C T G C G T A G T A C A T C G A G T C A G T C A C G T
A C G T A C G T A C G T A C G T A C T G A C T G C T G A C G T A C G T A A G C T A G C T A G T C G T A C T A G C

PB0030.1_Hnf4a_1/Jaspar

Match Rank:9
Score:0.53
Offset:1
Orientation:reverse strand
Alignment:GCCKGGWGAMSCC-----
-NNANTTGACCCCTNNNN
 A T C G A G T C A G T C C A G T A C T G A T C G C G T A A C T G C G T A G T A C A T C G A G T C A G T C A C G T A C G T A C G T A C G T A C G T
A C G T A C G T G T A C C G T A T C G A A C G T A C G T C T A G G T C A G T A C G T A C A G T C A G T C C A G T A C T G T C A G G T C A T A C G

PB0153.1_Nr2f2_2/Jaspar

Match Rank:10
Score:0.52
Offset:-3
Orientation:forward strand
Alignment:---GCCKGGWGAMSCC
CGCGCCGGGTCACGTA
 A C G T A C G T A C G T A T C G A G T C A G T C C A G T A C T G A T C G C G T A A C T G C G T A G T A C A T C G A G T C A G T C
T A G C A C T G T G A C A C T G A G T C A T G C C T A G A C T G A C T G A C G T A G T C C T G A T A G C A C T G A G C T G C T A