Information for 8-AGCATAAGTATTA (Motif 9)

C G T A C T A G T A G C C T G A C A G T G C T A C T G A A C T G G A C T C T G A A G C T A C G T C G T A
Reverse Opposite:
A C G T T G C A C T G A A G C T C T G A A G T C A G C T C G A T G C T A G A C T A C T G A G T C C G A T
p-value:1e-8
log p-value:-2.056e+01
Information Content per bp:1.768
Number of Target Sequences with motif6.0
Percentage of Target Sequences with motif1.13%
Number of Background Sequences with motif9.3
Percentage of Background Sequences with motif0.02%
Average Position of motif in Targets46.7 +/- 23.1bp
Average Position of motif in Background40.8 +/- 20.1bp
Strand Bias (log2 ratio + to - strand density)1.0
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

GSC/MA0648.1/Jaspar

Match Rank:1
Score:0.55
Offset:5
Orientation:reverse strand
Alignment:AGCATAAGTATTA--
-----NNGGATTAGN
 C G T A C T A G T A G C C T G A C A G T G C T A C T G A A C T G G A C T C T G A A G C T A C G T C G T A A C G T A C G T
A C G T A C G T A C G T A C G T A C G T C T A G T A C G T C A G T C A G T G C A A C G T G A C T C T G A C T A G A T G C

Pitx1(Homeobox)/Chicken-Pitx1-ChIP-Seq(GSE38910)/Homer

Match Rank:2
Score:0.55
Offset:5
Orientation:reverse strand
Alignment:AGCATAAGTATTA
-----NGGGATTA
 C G T A C T A G T A G C C T G A C A G T G C T A C T G A A C T G G A C T C T G A A G C T A C G T C G T A
A C G T A C G T A C G T A C G T A C G T T G A C C T A G C T A G T C A G G T C A G C A T G A C T G C T A

Otx2(Homeobox)/EpiLC-Otx2-ChIP-Seq(GSE56098)/Homer

Match Rank:3
Score:0.55
Offset:5
Orientation:reverse strand
Alignment:AGCATAAGTATTA--
-----VRGGATTARN
 C G T A C T A G T A G C C T G A C A G T G C T A C T G A A C T G G A C T C T G A A G C T A C G T C G T A A C G T A C G T
A C G T A C G T A C G T A C G T A C G T T C G A C T A G C T A G C T A G G T C A A C G T C G A T C G T A C T G A T A G C

NKX3-2/MA0122.2/Jaspar

Match Rank:4
Score:0.55
Offset:3
Orientation:reverse strand
Alignment:AGCATAAGTATTA
---TTAAGTGGN-
 C G T A C T A G T A G C C T G A C A G T G C T A C T G A A C T G G A C T C T G A A G C T A C G T C G T A
A C G T A C G T A C G T G A C T C G A T C T G A T C G A C A T G C G A T C T A G A T C G A G C T A C G T

OTX2/MA0712.1/Jaspar

Match Rank:5
Score:0.54
Offset:6
Orientation:reverse strand
Alignment:AGCATAAGTATTA-
------NGGATTAA
 C G T A C T A G T A G C C T G A C A G T G C T A C T G A A C T G G A C T C T G A A G C T A C G T C G T A A C G T
A C G T A C G T A C G T A C G T A C G T A C G T T G C A T C A G C T A G G T C A A C G T G C A T C G T A C T G A

BHLHE23/MA0817.1/Jaspar

Match Rank:6
Score:0.54
Offset:-1
Orientation:reverse strand
Alignment:-AGCATAAGTATTA
NAACATATGTTT--
 A C G T C G T A C T A G T A G C C T G A C A G T G C T A C T G A A C T G G A C T C T G A A G C T A C G T C G T A
G C T A C T G A T G C A T G A C C T G A A C G T T C G A G A C T A C T G A C G T A G C T G C A T A C G T A C G T

GSC2/MA0891.1/Jaspar

Match Rank:7
Score:0.54
Offset:5
Orientation:reverse strand
Alignment:AGCATAAGTATTA--
-----GNGGATTAGN
 C G T A C T A G T A G C C T G A C A G T G C T A C T G A A C T G G A C T C T G A A G C T A C G T C G T A A C G T A C G T
A C G T A C G T A C G T A C G T A C G T C T A G T A G C T C A G C A T G T G C A C G A T C G A T C G T A C T A G A C T G

Pitx1/MA0682.1/Jaspar

Match Rank:8
Score:0.54
Offset:6
Orientation:reverse strand
Alignment:AGCATAAGTATTA-
------GGGATTAA
 C G T A C T A G T A G C C T G A C A G T G C T A C T G A A C T G G A C T C T G A A G C T A C G T C G T A A C G T
A C G T A C G T A C G T A C G T A C G T A C G T C A T G C T A G C T A G G T C A C G A T A G C T C G T A C T G A

Nkx3-1/MA0124.2/Jaspar

Match Rank:9
Score:0.54
Offset:3
Orientation:reverse strand
Alignment:AGCATAAGTATTA
---TTAAGTGGT-
 C G T A C T A G T A G C C T G A C A G T G C T A C T G A A C T G G A C T C T G A A G C T A C G T C G T A
A C G T A C G T A C G T G A C T C G A T C T G A C T G A A C T G C G A T T C A G A T C G A G C T A C G T

HLTF/MA0109.1/Jaspar

Match Rank:10
Score:0.54
Offset:1
Orientation:reverse strand
Alignment:AGCATAAGTATTA
-NNATAAGGNN--
 C G T A C T A G T A G C C T G A C A G T G C T A C T G A A C T G G A C T C T G A A G C T A C G T C G T A
A C G T C G T A A C G T G T C A G C A T C G T A C G T A A C T G A C T G C G A T G C A T A C G T A C G T