Information for 9-AATAAAACTGTGT (Motif 11)

G T C A C T G A A C G T C G T A G T C A C G T A C G T A A G T C A C G T A C T G A C G T A C T G A C G T
Reverse Opposite:
C G T A A G T C C G T A A G T C C G T A A C T G A C G T A C G T A C G T A C G T G T C A A G C T A C G T
p-value:1e-8
log p-value:-1.847e+01
Information Content per bp:1.936
Number of Target Sequences with motif4.0
Percentage of Target Sequences with motif0.75%
Number of Background Sequences with motif2.2
Percentage of Background Sequences with motif0.00%
Average Position of motif in Targets46.2 +/- 26.0bp
Average Position of motif in Background50.7 +/- 8.2bp
Strand Bias (log2 ratio + to - strand density)-1.6
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

PH0078.1_Hoxd13/Jaspar

Match Rank:1
Score:0.67
Offset:-5
Orientation:forward strand
Alignment:-----AATAAAACTGTGT
CTACCAATAAAATTCT--
 A C G T A C G T A C G T A C G T A C G T G T C A C T G A A C G T C G T A G T C A C G T A C G T A A G T C A C G T A C T G A C G T A C T G A C G T
G T A C C G A T G C T A A G T C G A T C G C T A C G T A A G C T C G T A C G T A C G T A G C T A G A C T G A C T G T A C G A C T A C G T A C G T

HOXD13/MA0909.1/Jaspar

Match Rank:2
Score:0.64
Offset:-2
Orientation:forward strand
Alignment:--AATAAAACTGTGT
CCAATAAAAA-----
 A C G T A C G T G T C A C T G A A C G T C G T A G T C A C G T A C G T A A G T C A C G T A C T G A C G T A C T G A C G T
A T G C G A T C G T C A C G T A A G C T C G T A G C T A G T C A G T C A G T C A A C G T A C G T A C G T A C G T A C G T

HOXB13/MA0901.1/Jaspar

Match Rank:3
Score:0.63
Offset:-2
Orientation:forward strand
Alignment:--AATAAAACTGTGT
CCAATAAAAC-----
 A C G T A C G T G T C A C T G A A C G T C G T A G T C A C G T A C G T A A G T C A C G T A C T G A C G T A C T G A C G T
T A G C G A T C G T C A C G T A A G C T C G T A C G T A G T C A G T C A G T A C A C G T A C G T A C G T A C G T A C G T

HOXA13/MA0650.1/Jaspar

Match Rank:4
Score:0.63
Offset:-2
Orientation:forward strand
Alignment:--AATAAAACTGTGT
CCAATAAAAA-----
 A C G T A C G T G T C A C T G A A C G T C G T A G T C A C G T A C G T A A G T C A C G T A C T G A C G T A C T G A C G T
T A G C A G T C G T C A C G T A A C G T G C T A C G T A G T C A T G C A G T C A A C G T A C G T A C G T A C G T A C G T

PH0075.1_Hoxd10/Jaspar

Match Rank:5
Score:0.63
Offset:-5
Orientation:forward strand
Alignment:-----AATAAAACTGTGT
AATGCAATAAAATTTAT-
 A C G T A C G T A C G T A C G T A C G T G T C A C T G A A C G T C G T A G T C A C G T A C G T A A G T C A C G T A C T G A C G T A C T G A C G T
T G C A C T G A A C G T T C A G G A T C G T C A C G T A A G C T C G T A C G T A C G T A T C G A G A C T C G A T C G A T C G T A G C A T A C G T

HOXD13(Homeobox)/Chicken-Hoxd13-ChIP-Seq(GSE38910)/Homer

Match Rank:6
Score:0.62
Offset:-3
Orientation:forward strand
Alignment:---AATAAAACTGTGT
NCYAATAAAA------
 A C G T A C G T A C G T G T C A C T G A A C G T C G T A G T C A C G T A C G T A A G T C A C G T A C T G A C G T A C T G A C G T
C G A T T A G C G A C T G T C A C G T A A C G T C G T A C G T A C G T A G C T A A C G T A C G T A C G T A C G T A C G T A C G T

Cdx2(Homeobox)/mES-Cdx2-ChIP-Seq(GSE14586)/Homer

Match Rank:7
Score:0.61
Offset:-2
Orientation:forward strand
Alignment:--AATAAAACTGTGT
GTCATAAAAN-----
 A C G T A C G T G T C A C T G A A C G T C G T A G T C A C G T A C G T A A G T C A C G T A C T G A C G T A C T G A C G T
T C A G A G C T G T A C C G T A A C G T C G T A C G T A C G T A G C T A G A C T A C G T A C G T A C G T A C G T A C G T

CDX1/MA0878.1/Jaspar

Match Rank:8
Score:0.61
Offset:-2
Orientation:forward strand
Alignment:--AATAAAACTGTGT
GCAATAAAA------
 A C G T A C G T G T C A C T G A A C G T C G T A G T C A C G T A C G T A A G T C A C G T A C T G A C G T A C T G A C G T
T C A G G A T C G T C A T C G A G C A T G C T A C G T A G C T A G T C A A C G T A C G T A C G T A C G T A C G T A C G T

HOXA10/MA0899.1/Jaspar

Match Rank:9
Score:0.61
Offset:-3
Orientation:forward strand
Alignment:---AATAAAACTGTGT
GGTAATAAAAA-----
 A C G T A C G T A C G T G T C A C T G A A C G T C G T A G T C A C G T A C G T A A G T C A C G T A C T G A C G T A C T G A C G T
C T A G T C A G G A C T T G C A T C G A G C A T C G T A C G T A G T C A G T C A G T C A A C G T A C G T A C G T A C G T A C G T

CDX2/MA0465.1/Jaspar

Match Rank:10
Score:0.59
Offset:-4
Orientation:forward strand
Alignment:----AATAAAACTGTGT
AAGCCATAAAA------
 A C G T A C G T A C G T A C G T G T C A C T G A A C G T C G T A G T C A C G T A C G T A A G T C A C G T A C T G A C G T A C T G A C G T
T C G A C T G A T C A G A G T C G T A C C G T A A C G T C G T A C G T A C G T A T C G A A C G T A C G T A C G T A C G T A C G T A C G T