Motif Name	Consensus	P-value	Log P-value	q-value (Benjamini)	# of Target Sequences with Motif(of 786)	% of Target Sequences with Motif	# of Background Sequences with Motif(of 24664)	% of Background Sequences with Motif
HRE(HSF)/Striatum-HSF1-ChIP-Seq(GSE38000)/Homer	TTCTAGAABNTTCTA	1e-269	-6.204e+02	0.0000	243.0	30.92%	271.3	1.10%
HRE(HSF)/HepG2-HSF1-ChIP-Seq(GSE31477)/Homer	BSTTCTRGAABVTTCYAGAA	1e-180	-4.155e+02	0.0000	163.0	20.74%	173.2	0.70%
BATF(bZIP)/Th17-BATF-ChIP-Seq(GSE39756)/Homer	DATGASTCAT	1e-28	-6.477e+01	0.0000	81.0	10.31%	563.6	2.28%
ZBTB12(Zf)/HEK293-ZBTB12.GFP-ChIP-Seq(GSE58341)/Homer	NGNTCTAGAACCNGV	1e-27	-6.349e+01	0.0000	71.0	9.03%	439.8	1.78%
Atf3(bZIP)/GBM-ATF3-ChIP-Seq(GSE33912)/Homer	DATGASTCATHN	1e-25	-5.893e+01	0.0000	78.0	9.92%	573.6	2.32%
AP-1(bZIP)/ThioMac-PU.1-ChIP-Seq(GSE21512)/Homer	VTGACTCATC	1e-25	-5.788e+01	0.0000	82.0	10.43%	642.9	2.60%
JunB(bZIP)/DendriticCells-Junb-ChIP-Seq(GSE36099)/Homer	RATGASTCAT	1e-24	-5.693e+01	0.0000	68.0	8.65%	451.7	1.82%
Fra2(bZIP)/Striatum-Fra2-ChIP-Seq(GSE43429)/Homer	GGATGACTCATC	1e-20	-4.796e+01	0.0000	59.0	7.51%	404.9	1.64%
Fra1(bZIP)/BT549-Fra1-ChIP-Seq(GSE46166)/Homer	NNATGASTCATH	1e-20	-4.789e+01	0.0000	66.0	8.40%	504.1	2.04%
Fosl2(bZIP)/3T3L1-Fosl2-ChIP-Seq(GSE56872)/Homer	NATGASTCABNN	1e-20	-4.736e+01	0.0000	45.0	5.73%	232.4	0.94%
Jun-AP1(bZIP)/K562-cJun-ChIP-Seq(GSE31477)/Homer	GATGASTCATCN	1e-19	-4.538e+01	0.0000	37.0	4.71%	157.3	0.64%
CTCF(Zf)/CD4+-CTCF-ChIP-Seq(Barski_et_al.)/Homer	AYAGTGCCMYCTRGTGGCCA	1e-11	-2.668e+01	0.0000	19.0	2.42%	69.8	0.28%
Bach2(bZIP)/OCILy7-Bach2-ChIP-Seq(GSE44420)/Homer	TGCTGAGTCA	1e-10	-2.350e+01	0.0000	22.0	2.80%	116.7	0.47%
Sp5(Zf)/mES-Sp5.Flag-ChIP-Seq(GSE72989)/Homer	RGKGGGCGGAGC	1e-9	-2.286e+01	0.0000	77.0	9.80%	1091.3	4.41%
p73(p53)/Trachea-p73-ChIP-Seq(PRJNA310161)/Homer	NRRRCAWGTCCDGRCATGYY	1e-8	-2.027e+01	0.0000	10.0	1.27%	20.6	0.08%
Bcl6(Zf)/Liver-Bcl6-ChIP-Seq(GSE31578)/Homer	NNNCTTTCCAGGAAA	1e-8	-1.990e+01	0.0000	105.0	13.36%	1807.5	7.30%
TEAD4(TEA)/Tropoblast-Tead4-ChIP-Seq(GSE37350)/Homer	CCWGGAATGY	1e-8	-1.944e+01	0.0000	69.0	8.78%	1006.2	4.06%
KLF5(Zf)/LoVo-KLF5-ChIP-Seq(GSE49402)/Homer	DGGGYGKGGC	1e-8	-1.845e+01	0.0000	81.0	10.31%	1298.7	5.25%
TEAD2(TEA)/Py2T-Tead2-ChIP-Seq(GSE55709)/Homer	CCWGGAATGY	1e-7	-1.729e+01	0.0000	48.0	6.11%	621.9	2.51%
Maz(Zf)/HepG2-Maz-ChIP-Seq(GSE31477)/Homer	GGGGGGGG	1e-7	-1.720e+01	0.0000	87.0	11.07%	1476.3	5.96%
KLF14(Zf)/HEK293-KLF14.GFP-ChIP-Seq(GSE58341)/Homer	RGKGGGCGKGGC	1e-7	-1.716e+01	0.0000	102.0	12.98%	1834.8	7.41%
STAT4(Stat)/CD4-Stat4-ChIP-Seq(GSE22104)/Homer	NYTTCCWGGAAR	1e-7	-1.667e+01	0.0000	78.0	9.92%	1286.0	5.20%
p53(p53)/Saos-p53-ChIP-Seq(GSE15780)/Homer	RRCATGYCYRGRCATGYYYN	1e-6	-1.584e+01	0.0000	11.0	1.40%	41.2	0.17%
p53(p53)/Saos-p53-ChIP-Seq/Homer	RRCATGYCYRGRCATGYYYN	1e-6	-1.584e+01	0.0000	11.0	1.40%	41.2	0.17%
Stat3(Stat)/mES-Stat3-ChIP-Seq(GSE11431)/Homer	CTTCCGGGAA	1e-6	-1.570e+01	0.0000	48.0	6.11%	656.8	2.65%
BORIS(Zf)/K562-CTCFL-ChIP-Seq(GSE32465)/Homer	CNNBRGCGCCCCCTGSTGGC	1e-6	-1.526e+01	0.0000	20.0	2.54%	155.3	0.63%
KLF6(Zf)/PDAC-KLF6-ChIP-Seq(GSE64557)/Homer	MKGGGYGTGGCC	1e-5	-1.342e+01	0.0000	63.0	8.02%	1046.3	4.23%
Stat3+il21(Stat)/CD4-Stat3-ChIP-Seq(GSE19198)/Homer	SVYTTCCNGGAARB	1e-5	-1.321e+01	0.0000	54.0	6.87%	849.7	3.43%
CEBP(bZIP)/ThioMac-CEBPb-ChIP-Seq(GSE21512)/Homer	ATTGCGCAAC	1e-5	-1.215e+01	0.0001	47.0	5.98%	725.8	2.93%
Egr1(Zf)/K562-Egr1-ChIP-Seq(GSE32465)/Homer	TGCGTGGGYG	1e-5	-1.164e+01	0.0001	39.0	4.96%	566.2	2.29%
Zfp281(Zf)/ES-Zfp281-ChIP-Seq(GSE81042)/Homer	CCCCTCCCCCAC	1e-5	-1.161e+01	0.0001	18.0	2.29%	165.3	0.67%
CEBP:AP1(bZIP)/ThioMac-CEBPb-ChIP-Seq(GSE21512)/Homer	DRTGTTGCAA	1e-4	-1.065e+01	0.0003	48.0	6.11%	793.1	3.20%
STAT1(Stat)/HelaS3-STAT1-ChIP-Seq(GSE12782)/Homer	NATTTCCNGGAAAT	1e-4	-1.052e+01	0.0003	32.0	4.07%	447.2	1.81%
TEAD(TEA)/Fibroblast-PU.1-ChIP-Seq(Unpublished)/Homer	YCWGGAATGY	1e-4	-1.037e+01	0.0003	49.0	6.23%	825.7	3.34%
Klf9(Zf)/GBM-Klf9-ChIP-Seq(GSE62211)/Homer	GCCACRCCCACY	1e-4	-1.005e+01	0.0004	25.0	3.18%	316.4	1.28%
KLF3(Zf)/MEF-Klf3-ChIP-Seq(GSE44748)/Homer	NRGCCCCRCCCHBNN	1e-4	-9.903e+00	0.0005	31.0	3.94%	441.1	1.78%
p63(p53)/Keratinocyte-p63-ChIP-Seq(GSE17611)/Homer	NNDRCATGYCYNRRCATGYH	1e-4	-9.781e+00	0.0006	19.0	2.42%	208.2	0.84%
MafK(bZIP)/C2C12-MafK-ChIP-Seq(GSE36030)/Homer	GCTGASTCAGCA	1e-4	-9.638e+00	0.0006	15.0	1.91%	141.7	0.57%
NF-E2(bZIP)/K562-NFE2-ChIP-Seq(GSE31477)/Homer	GATGACTCAGCA	1e-4	-9.594e+00	0.0006	6.0	0.76%	21.4	0.09%
Nrf2(bZIP)/Lymphoblast-Nrf2-ChIP-Seq(GSE37589)/Homer	HTGCTGAGTCAT	1e-4	-9.594e+00	0.0006	6.0	0.76%	21.9	0.09%
Elk4(ETS)/Hela-Elk4-ChIP-Seq(GSE31477)/Homer	NRYTTCCGGY	1e-3	-9.193e+00	0.0009	46.0	5.85%	796.9	3.22%
Chop(bZIP)/MEF-Chop-ChIP-Seq(GSE35681)/Homer	ATTGCATCAT	1e-3	-7.743e+00	0.0038	19.0	2.42%	245.8	0.99%
Bach1(bZIP)/K562-Bach1-ChIP-Seq(GSE31477)/Homer	AWWNTGCTGAGTCAT	1e-3	-7.693e+00	0.0039	6.0	0.76%	30.5	0.12%
Egr2(Zf)/Thymocytes-Egr2-ChIP-Seq(GSE34254)/Homer	NGCGTGGGCGGR	1e-3	-7.377e+00	0.0052	12.0	1.53%	121.4	0.49%
HLF(bZIP)/HSC-HLF.Flag-ChIP-Seq(GSE69817)/Homer	RTTATGYAAB	1e-3	-7.162e+00	0.0063	55.0	7.00%	1100.7	4.45%
Atf4(bZIP)/MEF-Atf4-ChIP-Seq(GSE35681)/Homer	MTGATGCAAT	1e-3	-7.067e+00	0.0067	21.0	2.67%	301.6	1.22%
AR-halfsite(NR)/LNCaP-AR-ChIP-Seq(GSE27824)/Homer	CCAGGAACAG	1e-2	-6.787e+00	0.0087	171.0	21.76%	4319.8	17.45%
Elk1(ETS)/Hela-Elk1-ChIP-Seq(GSE31477)/Homer	HACTTCCGGY	1e-2	-6.698e+00	0.0093	41.0	5.22%	773.4	3.12%
EKLF(Zf)/Erythrocyte-Klf1-ChIP-Seq(GSE20478)/Homer	NWGGGTGTGGCY	1e-2	-6.435e+00	0.0119	13.0	1.65%	154.8	0.63%
ZBTB18(Zf)/HEK293-ZBTB18.GFP-ChIP-Seq(GSE58341)/Homer	AACATCTGGA	1e-2	-5.950e+00	0.0190	26.0	3.31%	444.9	1.80%
Tcf21(bHLH)/ArterySmoothMuscle-Tcf21-ChIP-Seq(GSE61369)/Homer	NAACAGCTGG	1e-2	-5.595e+00	0.0265	45.0	5.73%	925.9	3.74%
KLF10(Zf)/HEK293-KLF10.GFP-ChIP-Seq(GSE58341)/Homer	GGGGGTGTGTCC	1e-2	-5.357e+00	0.0330	24.0	3.05%	418.6	1.69%
ETV1(ETS)/GIST48-ETV1-ChIP-Seq(GSE22441)/Homer	AACCGGAAGT	1e-2	-5.288e+00	0.0347	74.0	9.41%	1714.9	6.93%
NFkB-p65-Rel(RHD)/ThioMac-LPS-Expression(GSE23622)/Homer	GGAAATTCCC	1e-2	-5.007e+00	0.0451	7.0	0.89%	68.6	0.28%
Klf4(Zf)/mES-Klf4-ChIP-Seq(GSE11431)/Homer	GCCACACCCA	1e-2	-4.865e+00	0.0510	18.0	2.29%	296.3	1.20%
EWS:FLI1-fusion(ETS)/SK_N_MC-EWS:FLI1-ChIP-Seq(SRA014231)/Homer	VACAGGAAAT	1e-2	-4.718e+00	0.0580	32.0	4.07%	639.1	2.58%
GABPA(ETS)/Jurkat-GABPa-ChIP-Seq(GSE17954)/Homer	RACCGGAAGT	1e-2	-4.710e+00	0.0580	49.0	6.23%	1080.4	4.36%
NFAT(RHD)/Jurkat-NFATC1-ChIP-Seq(Jolma_et_al.)/Homer	ATTTTCCATT	1e-1	-4.571e+00	0.0649	52.0	6.62%	1169.1	4.72%
ETS(ETS)/Promoter/Homer	AACCGGAAGT	1e-1	-4.531e+00	0.0664	23.0	2.93%	425.4	1.72%
bHLHE40(bHLH)/HepG2-BHLHE40-ChIP-Seq(GSE31477)/Homer	KCACGTGMCN	1e-1	-4.519e+00	0.0664	13.0	1.65%	195.5	0.79%
STAT5(Stat)/mCD4+-Stat5-ChIP-Seq(GSE12346)/Homer	RTTTCTNAGAAA	1e-1	-4.465e+00	0.0686	26.0	3.31%	501.2	2.02%
THRa(NR)/C17.2-THRa-ChIP-Seq(GSE38347)/Homer	GGTCANYTGAGGWCA	1e-1	-4.403e+00	0.0718	18.0	2.29%	311.6	1.26%
NF1(CTF)/LNCAP-NF1-ChIP-Seq(Unpublished)/Homer	CYTGGCABNSTGCCAR	1e-1	-4.303e+00	0.0782	19.0	2.42%	338.6	1.37%
CRE(bZIP)/Promoter/Homer	CSGTGACGTCAC	1e-1	-4.247e+00	0.0813	11.0	1.40%	159.1	0.64%
Sp1(Zf)/Promoter/Homer	GGCCCCGCCCCC	1e-1	-4.218e+00	0.0825	17.0	2.16%	294.5	1.19%
Fli1(ETS)/CD8-FLI-ChIP-Seq(GSE20898)/Homer	NRYTTCCGGH	1e-1	-4.192e+00	0.0834	61.0	7.76%	1441.5	5.82%
Ronin(THAP)/ES-Thap11-ChIP-Seq(GSE51522)/Homer	RACTACAACTCCCAGVAKGC	1e-1	-4.178e+00	0.0834	6.0	0.76%	62.8	0.25%
Ap4(bHLH)/AML-Tfap4-ChIP-Seq(GSE45738)/Homer	NAHCAGCTGD	1e-1	-4.141e+00	0.0852	53.0	6.74%	1226.2	4.95%
RUNX(Runt)/HPC7-Runx1-ChIP-Seq(GSE22178)/Homer	SAAACCACAG	1e-1	-3.811e+00	0.1167	27.0	3.44%	557.2	2.25%
HNF1b(Homeobox)/PDAC-HNF1B-ChIP-Seq(GSE64557)/Homer	GTTAATNATTAA	1e-1	-3.806e+00	0.1167	14.0	1.78%	238.9	0.97%
PR(NR)/T47D-PR-ChIP-Seq(GSE31130)/Homer	VAGRACAKNCTGTBC	1e-1	-3.786e+00	0.1167	93.0	11.83%	2380.8	9.62%
USF1(bHLH)/GM12878-Usf1-ChIP-Seq(GSE32465)/Homer	SGTCACGTGR	1e-1	-3.697e+00	0.1254	18.0	2.29%	337.7	1.36%
OCT:OCT-short(POU,Homeobox)/NPC-OCT6-ChIP-Seq(GSE43916)/Homer	ATGCATWATGCATRW	1e-1	-3.647e+00	0.1300	44.0	5.60%	1017.5	4.11%
MITF(bHLH)/MastCells-MITF-ChIP-Seq(GSE48085)/Homer	RTCATGTGAC	1e-1	-3.571e+00	0.1384	31.0	3.94%	674.7	2.73%
Rfx5(HTH)/GM12878-Rfx5-ChIP-Seq(GSE31477)/Homer	SCCTAGCAACAG	1e-1	-3.531e+00	0.1421	15.0	1.91%	271.9	1.10%
GFY-Staf(?,Zf)/Promoter/Homer	RACTACAATTCCCAGAAKGC	1e-1	-3.476e+00	0.1481	7.0	0.89%	93.2	0.38%
ZBTB33(Zf)/GM12878-ZBTB33-ChIP-Seq(GSE32465)/Homer	GGVTCTCGCGAGAAC	1e-1	-3.375e+00	0.1618	4.0	0.51%	38.3	0.15%
HIF-1a(bHLH)/MCF7-HIF1a-ChIP-Seq(GSE28352)/Homer	TACGTGCV	1e-1	-3.332e+00	0.1666	12.0	1.53%	207.6	0.84%
n-Myc(bHLH)/mES-nMyc-ChIP-Seq(GSE11431)/Homer	VRCCACGTGG	1e-1	-3.312e+00	0.1680	23.0	2.93%	480.9	1.94%
GRE(NR),IR3/RAW264.7-GRE-ChIP-Seq(Unpublished)/Homer	VAGRACAKWCTGTYC	1e-1	-3.272e+00	0.1726	12.0	1.53%	209.6	0.85%
FOXA1(Forkhead)/LNCAP-FOXA1-ChIP-Seq(GSE27824)/Homer	WAAGTAAACA	1e-1	-3.198e+00	0.1836	62.0	7.89%	1555.4	6.28%
ELF1(ETS)/Jurkat-ELF1-ChIP-Seq(SRA014231)/Homer	AVCCGGAAGT	1e-1	-3.105e+00	0.1990	31.0	3.94%	704.0	2.84%
NF1-halfsite(CTF)/LNCaP-NF1-ChIP-Seq(Unpublished)/Homer	YTGCCAAG	1e-1	-3.090e+00	0.1995	73.0	9.29%	1880.7	7.60%
Atf1(bZIP)/K562-ATF1-ChIP-Seq(GSE31477)/Homer	GATGACGTCA	1e-1	-3.083e+00	0.1995	26.0	3.31%	571.3	2.31%
Hoxb4(Homeobox)/ES-Hoxb4-ChIP-Seq(GSE34014)/Homer	TGATTRATGGCY	1e-1	-3.035e+00	0.2058	10.0	1.27%	170.5	0.69%
c-Myc(bHLH)/LNCAP-cMyc-ChIP-Seq(Unpublished)/Homer	VCCACGTG	1e-1	-2.989e+00	0.2132	18.0	2.29%	368.4	1.49%
RUNX2(Runt)/PCa-RUNX2-ChIP-Seq(GSE33889)/Homer	NWAACCACADNN	1e-1	-2.958e+00	0.2172	28.0	3.56%	632.1	2.55%
CLOCK(bHLH)/Liver-Clock-ChIP-Seq(GSE39860)/Homer	GHCACGTG	1e-1	-2.947e+00	0.2172	18.0	2.29%	370.4	1.50%
ERG(ETS)/VCaP-ERG-ChIP-Seq(GSE14097)/Homer	ACAGGAAGTG	1e-1	-2.941e+00	0.2172	77.0	9.80%	2012.9	8.13%
Sox17(HMG)/Endoderm-Sox17-ChIP-Seq(GSE61475)/Homer	CCATTGTTYB	1e-1	-2.866e+00	0.2303	29.0	3.69%	665.4	2.69%
FXR(NR),IR1/Liver-FXR-ChIP-Seq(Chong_et_al.)/Homer	AGGTCANTGACCTB	1e-1	-2.865e+00	0.2303	16.0	2.04%	323.3	1.31%
Rfx6(HTH)/Min6b1-Rfx6.HA-ChIP-Seq(GSE62844)/Homer	TGTTKCCTAGCAACM	1e-1	-2.859e+00	0.2303	42.0	5.34%	1024.0	4.14%
Usf2(bHLH)/C2C12-Usf2-ChIP-Seq(GSE36030)/Homer	GTCACGTGGT	1e-1	-2.791e+00	0.2403	11.0	1.40%	202.9	0.82%
ZFP3(Zf)/HEK293-ZFP3.GFP-ChIP-Seq(GSE58341)/Homer	GGGTTTTGAAGGATGARTAGGAGTT	1e-1	-2.788e+00	0.2403	1.0	0.13%	2.1	0.01%
Zic(Zf)/Cerebellum-ZIC1.2-ChIP-Seq(GSE60731)/Homer	CCTGCTGAGH	1e-1	-2.781e+00	0.2403	33.0	4.20%	780.1	3.15%
p53(p53)/mES-cMyc-ChIP-Seq(GSE11431)/Homer	ACATGCCCGGGCAT	1e-1	-2.734e+00	0.2464	2.0	0.25%	14.0	0.06%
E-box(bHLH)/Promoter/Homer	SSGGTCACGTGA	1e-1	-2.680e+00	0.2572	4.0	0.51%	48.9	0.20%
Foxa2(Forkhead)/Liver-Foxa2-ChIP-Seq(GSE25694)/Homer	CYTGTTTACWYW	1e-1	-2.628e+00	0.2683	36.0	4.58%	875.5	3.54%
Tbx5(T-box)/HL1-Tbx5.biotin-ChIP-Seq(GSE21529)/Homer	AGGTGTCA	1e-1	-2.594e+00	0.2747	123.0	15.65%	3415.9	13.80%
GATA(Zf),IR4/iTreg-Gata3-ChIP-Seq(GSE20898)/Homer	NAGATWNBNATCTNN	1e-1	-2.458e+00	0.3115	5.0	0.64%	73.6	0.30%
MafB(bZIP)/BMM-Mafb-ChIP-Seq(GSE75722)/Homer	WNTGCTGASTCAGCANWTTY	1e-1	-2.440e+00	0.3141	14.0	1.78%	292.1	1.18%
MyoG(bHLH)/C2C12-MyoG-ChIP-Seq(GSE36024)/Homer	AACAGCTG	1e-1	-2.429e+00	0.3144	41.0	5.22%	1033.7	4.18%
NFkB-p65(RHD)/GM12787-p65-ChIP-Seq(GSE19485)/Homer	WGGGGATTTCCC	1e-1	-2.429e+00	0.3144	24.0	3.05%	559.7	2.26%
CRX(Homeobox)/Retina-Crx-ChIP-Seq(GSE20012)/Homer	GCTAATCC	1e-1	-2.399e+00	0.3178	106.0	13.49%	2938.8	11.87%
E2F3(E2F)/MEF-E2F3-ChIP-Seq(GSE71376)/Homer	BTKGGCGGGAAA	1e-1	-2.338e+00	0.3345	27.0	3.44%	648.7	2.62%
GSC(Homeobox)/FrogEmbryos-GSC-ChIP-Seq(DRA000576)/Homer	RGGATTAR	1e-1	-2.338e+00	0.3345	56.0	7.12%	1473.5	5.95%
PAX3:FKHR-fusion(Paired,Homeobox)/Rh4-PAX3:FKHR-ChIP-Seq(GSE19063)/Homer	ACCRTGACTAATTNN	1e-1	-2.312e+00	0.3370	9.0	1.15%	171.4	0.69%
Sox6(HMG)/Myotubes-Sox6-ChIP-Seq(GSE32627)/Homer	CCATTGTTNY	1e-1	-2.309e+00	0.3370	62.0	7.89%	1651.9	6.67%
Sox4(HMG)/proB-Sox4-ChIP-Seq(GSE50066)/Homer	YCTTTGTTCC	1e-1	-2.306e+00	0.3370	30.0	3.82%	734.2	2.97%
Atf7(bZIP)/3T3L1-Atf7-ChIP-Seq(GSE56872)/Homer	NGRTGACGTCAY	1e0	-2.277e+00	0.3396	16.0	2.04%	353.8	1.43%
NeuroG2(bHLH)/Fibroblast-NeuroG2-ChIP-Seq(GSE75910)/Homer	ACCATCTGTT	1e0	-2.270e+00	0.3396	57.0	7.25%	1510.0	6.10%
Atoh1(bHLH)/Cerebellum-Atoh1-ChIP-Seq(GSE22111)/Homer	VNRVCAGCTGGY	1e0	-2.268e+00	0.3396	40.0	5.09%	1020.7	4.12%
Tcfcp2l1(CP2)/mES-Tcfcp2l1-ChIP-Seq(GSE11431)/Homer	NRAACCRGTTYRAACCRGYT	1e0	-2.212e+00	0.3526	6.0	0.76%	103.0	0.42%
Pit1+1bp(Homeobox)/GCrat-Pit1-ChIP-Seq(GSE58009)/Homer	ATGCATAATTCA	1e0	-2.201e+00	0.3533	25.0	3.18%	603.8	2.44%
FOXA1(Forkhead)/MCF7-FOXA1-ChIP-Seq(GSE26831)/Homer	WAAGTAAACA	1e0	-2.189e+00	0.3545	50.0	6.36%	1316.6	5.32%
Max(bHLH)/K562-Max-ChIP-Seq(GSE31477)/Homer	RCCACGTGGYYN	1e0	-2.143e+00	0.3681	19.0	2.42%	442.7	1.79%
c-Jun-CRE(bZIP)/K562-cJun-ChIP-Seq(GSE31477)/Homer	ATGACGTCATCY	1e0	-2.096e+00	0.3826	11.0	1.40%	231.2	0.93%
STAT6(Stat)/Macrophage-Stat6-ChIP-Seq(GSE38377)/Homer	TTCCKNAGAA	1e0	-2.063e+00	0.3919	33.0	4.20%	840.2	3.39%
Ptf1a(bHLH)/Panc1-Ptf1a-ChIP-Seq(GSE47459)/Homer	ACAGCTGTTN	1e0	-2.062e+00	0.3919	98.0	12.47%	2753.9	11.13%
HEB(bHLH)/mES-Heb-ChIP-Seq(GSE53233)/Homer	VCAGCTGBNN	1e0	-2.044e+00	0.3927	70.0	8.91%	1921.1	7.76%
MYB(HTH)/ERMYB-Myb-ChIPSeq(GSE22095)/Homer	GGCVGTTR	1e0	-2.029e+00	0.3956	77.0	9.80%	2131.7	8.61%
NF1:FOXA1(CTF,Forkhead)/LNCAP-FOXA1-ChIP-Seq(GSE27824)/Homer	WNTGTTTRYTTTGGCA	1e0	-1.996e+00	0.4056	3.0	0.38%	40.7	0.16%
ETS:RUNX(ETS,Runt)/Jurkat-RUNX1-ChIP-Seq(GSE17954)/Homer	RCAGGATGTGGT	1e0	-1.991e+00	0.4056	5.0	0.64%	85.3	0.34%
NPAS2(bHLH)/Liver-NPAS2-ChIP-Seq(GSE39860)/Homer	KCCACGTGAC	1e0	-1.984e+00	0.4056	32.0	4.07%	819.4	3.31%
E2F7(E2F)/Hela-E2F7-ChIP-Seq(GSE32673)/Homer	VDTTTCCCGCCA	1e0	-1.978e+00	0.4056	7.0	0.89%	134.1	0.54%
ZNF519(Zf)/HEK293-ZNF519.GFP-ChIP-Seq(GSE58341)/Homer	GAGSCCGAGC	1e0	-1.970e+00	0.4056	10.0	1.27%	211.9	0.86%
AP-2gamma(AP2)/MCF7-TFAP2C-ChIP-Seq(GSE21234)/Homer	SCCTSAGGSCAW	1e0	-1.941e+00	0.4113	44.0	5.60%	1170.4	4.73%
RUNX1(Runt)/Jurkat-RUNX1-ChIP-Seq(GSE29180)/Homer	AAACCACARM	1e0	-1.926e+00	0.4143	34.0	4.33%	882.6	3.57%
Nkx6.1(Homeobox)/Islet-Nkx6.1-ChIP-Seq(GSE40975)/Homer	GKTAATGR	1e0	-1.820e+00	0.4571	137.0	17.43%	3980.0	16.08%
IRF2(IRF)/Erythroblas-IRF2-ChIP-Seq(GSE36985)/Homer	GAAASYGAAASY	1e0	-1.816e+00	0.4571	6.0	0.76%	115.2	0.47%
Pitx1(Homeobox)/Chicken-Pitx1-ChIP-Seq(GSE38910)/Homer	TAATCCCN	1e0	-1.812e+00	0.4571	204.0	25.95%	6037.8	24.39%
JunD(bZIP)/K562-JunD-ChIP-Seq/Homer	ATGACGTCATCN	1e0	-1.794e+00	0.4587	4.0	0.51%	67.8	0.27%
FOXM1(Forkhead)/MCF7-FOXM1-ChIP-Seq(GSE72977)/Homer	TRTTTACTTW	1e0	-1.772e+00	0.4653	48.0	6.11%	1308.2	5.28%
Mef2d(MADS)/Retina-Mef2d-ChIP-Seq(GSE61391)/Homer	GCTATTTTTAGC	1e0	-1.731e+00	0.4809	11.0	1.40%	250.6	1.01%
EWS:ERG-fusion(ETS)/CADO_ES1-EWS:ERG-ChIP-Seq(SRA014231)/Homer	ATTTCCTGTN	1e0	-1.697e+00	0.4940	31.0	3.94%	819.4	3.31%
Zfp809(Zf)/ES-Zfp809-ChIP-Seq(GSE70799)/Homer	GGGGCTYGKCTGGGA	1e0	-1.679e+00	0.4995	9.0	1.15%	200.0	0.81%
Ascl1(bHLH)/NeuralTubes-Ascl1-ChIP-Seq(GSE55840)/Homer	NNVVCAGCTGBN	1e0	-1.640e+00	0.5152	54.0	6.87%	1504.7	6.08%
Tcf12(bHLH)/GM12878-Tcf12-ChIP-Seq(GSE32465)/Homer	VCAGCTGYTG	1e0	-1.636e+00	0.5152	33.0	4.20%	885.0	3.58%
Atf2(bZIP)/3T3L1-Atf2-ChIP-Seq(GSE56872)/Homer	NRRTGACGTCAT	1e0	-1.629e+00	0.5152	11.0	1.40%	256.7	1.04%
OCT:OCT(POU,Homeobox)/NPC-OCT6-ChIP-Seq(GSE43916)/Homer	YATGCATATRCATRT	1e0	-1.625e+00	0.5152	8.0	1.02%	175.5	0.71%
TFE3(bHLH)/MEF-TFE3-ChIP-Seq(GSE75757)/Homer	GTCACGTGACYV	1e0	-1.624e+00	0.5152	3.0	0.38%	48.6	0.20%
STAT6(Stat)/CD4-Stat6-ChIP-Seq(GSE22104)/Homer	ABTTCYYRRGAA	1e0	-1.603e+00	0.5161	30.0	3.82%	800.8	3.24%
ZNF415(Zf)/HEK293-ZNF415.GFP-ChIP-Seq(GSE58341)/Homer	GRTGMTRGAGCC	1e0	-1.601e+00	0.5161	20.0	2.54%	511.8	2.07%
HIF-1b(HLH)/T47D-HIF1b-ChIP-Seq(GSE59937)/Homer	RTACGTGC	1e0	-1.568e+00	0.5269	36.0	4.58%	980.4	3.96%
ZNF322(Zf)/HEK293-ZNF322.GFP-ChIP-Seq(GSE58341)/Homer	GAGCCTGGTACTGWGCCTGR	1e0	-1.555e+00	0.5303	10.0	1.27%	233.1	0.94%
Sox3(HMG)/NPC-Sox3-ChIP-Seq(GSE33059)/Homer	CCWTTGTY	1e0	-1.503e+00	0.5548	60.0	7.63%	1705.3	6.89%
Mef2a(MADS)/HL1-Mef2a.biotin-ChIP-Seq(GSE21529)/Homer	CYAAAAATAG	1e0	-1.488e+00	0.5591	21.0	2.67%	550.8	2.23%
PGR(NR)/EndoStromal-PGR-ChIP-Seq(GSE69539)/Homer	AAGAACATWHTGTTC	1e0	-1.472e+00	0.5642	10.0	1.27%	238.7	0.96%
DMRT6(DM)/Testis-DMRT6-ChIP-Seq(GSE60440)/Homer	YDGHTACAWTGTADC	1e0	-1.470e+00	0.5642	8.0	1.02%	183.9	0.74%
Znf263(Zf)/K562-Znf263-ChIP-Seq(GSE31477)/Homer	CVGTSCTCCC	1e0	-1.457e+00	0.5650	71.0	9.03%	2045.1	8.26%
AP-2alpha(AP2)/Hela-AP2alpha-ChIP-Seq(GSE31477)/Homer	ATGCCCTGAGGC	1e0	-1.448e+00	0.5663	31.0	3.94%	847.9	3.43%
ARE(NR)/LNCAP-AR-ChIP-Seq(GSE27824)/Homer	RGRACASNSTGTYCYB	1e0	-1.444e+00	0.5663	9.0	1.15%	212.5	0.86%
MyoD(bHLH)/Myotube-MyoD-ChIP-Seq(GSE21614)/Homer	RRCAGCTGYTSY	1e0	-1.438e+00	0.5663	26.0	3.31%	701.3	2.83%
RUNX-AML(Runt)/CD4+-PolII-ChIP-Seq(Barski_et_al.)/Homer	GCTGTGGTTW	1e0	-1.436e+00	0.5663	21.0	2.67%	555.6	2.24%
SPDEF(ETS)/VCaP-SPDEF-ChIP-Seq(SRA014231)/Homer	ASWTCCTGBT	1e0	-1.432e+00	0.5663	42.0	5.34%	1176.6	4.75%
ELF3(ETS)/PDAC-ELF3-ChIP-Seq(GSE64557)/Homer	ANCAGGAAGT	1e0	-1.424e+00	0.5663	31.0	3.94%	850.9	3.44%
Otx2(Homeobox)/EpiLC-Otx2-ChIP-Seq(GSE56098)/Homer	NYTAATCCYB	1e0	-1.418e+00	0.5663	33.0	4.20%	910.9	3.68%
ZNF416(Zf)/HEK293-ZNF416.GFP-ChIP-Seq(GSE58341)/Homer	WDNCTGGGCA	1e0	-1.393e+00	0.5720	52.0	6.62%	1482.6	5.99%
CTCF-SatelliteElement(Zf?)/CD4+-CTCF-ChIP-Seq(Barski_et_al.)/Homer	TGCAGTTCCMVNWRTGGCCA	1e0	-1.392e+00	0.5720	1.0	0.13%	9.8	0.04%
EHF(ETS)/LoVo-EHF-ChIP-Seq(GSE49402)/Homer	AVCAGGAAGT	1e0	-1.367e+00	0.5796	56.0	7.12%	1608.0	6.50%
NeuroD1(bHLH)/Islet-NeuroD1-ChIP-Seq(GSE30298)/Homer	GCCATCTGTT	1e0	-1.320e+00	0.6039	27.0	3.44%	744.0	3.01%
E2A(bHLH)/proBcell-E2A-ChIP-Seq(GSE21978)/Homer	DNRCAGCTGY	1e0	-1.292e+00	0.6172	49.0	6.23%	1408.2	5.69%
Tlx?(NR)/NPC-H3K4me1-ChIP-Seq(GSE16256)/Homer	CTGGCAGSCTGCCA	1e0	-1.245e+00	0.6431	14.0	1.78%	369.9	1.49%
Pit1(Homeobox)/GCrat-Pit1-ChIP-Seq(GSE58009)/Homer	ATGMATATDC	1e0	-1.232e+00	0.6476	56.0	7.12%	1631.5	6.59%
Lhx1(Homeobox)/EmbryoCarcinoma-Lhx1-ChIP-Seq(GSE70957)/Homer	NNYTAATTAR	1e0	-1.223e+00	0.6491	57.0	7.25%	1663.2	6.72%
Olig2(bHLH)/Neuron-Olig2-ChIP-Seq(GSE30882)/Homer	RCCATMTGTT	1e0	-1.221e+00	0.6491	71.0	9.03%	2091.5	8.45%
Gata4(Zf)/Heart-Gata4-ChIP-Seq(GSE35151)/Homer	NBWGATAAGR	1e0	-1.206e+00	0.6527	41.0	5.22%	1180.4	4.77%
Sox10(HMG)/SciaticNerve-Sox3-ChIP-Seq(GSE35132)/Homer	CCWTTGTYYB	1e0	-1.203e+00	0.6527	53.0	6.74%	1545.8	6.24%
GATA(Zf),IR3/iTreg-Gata3-ChIP-Seq(GSE20898)/Homer	NNNNNBAGATAWYATCTVHN	1e0	-1.173e+00	0.6662	6.0	0.76%	144.7	0.58%
Phox2a(Homeobox)/Neuron-Phox2a-ChIP-Seq(GSE31456)/Homer	YTAATYNRATTA	1e0	-1.163e+00	0.6690	21.0	2.67%	584.8	2.36%
Sox2(HMG)/mES-Sox2-ChIP-Seq(GSE11431)/Homer	BCCATTGTTC	1e0	-1.162e+00	0.6690	28.0	3.56%	794.7	3.21%
Sox15(HMG)/CPA-Sox15-ChIP-Seq(GSE62909)/Homer	RAACAATGGN	1e0	-1.156e+00	0.6690	38.0	4.83%	1097.9	4.44%
HOXA9(Homeobox)/HSC-Hoxa9-ChIP-Seq(GSE33509)/Homer	GGCCATAAATCA	1e0	-1.146e+00	0.6690	27.0	3.44%	766.4	3.10%
Myf5(bHLH)/GM-Myf5-ChIP-Seq(GSE24852)/Homer	BAACAGCTGT	1e0	-1.105e+00	0.6932	22.0	2.80%	621.4	2.51%
Zic3(Zf)/mES-Zic3-ChIP-Seq(GSE37889)/Homer	GGCCYCCTGCTGDGH	1e0	-1.096e+00	0.6953	20.0	2.54%	562.7	2.27%
NPAS(bHLH)/Liver-NPAS-ChIP-Seq(GSE39860)/Homer	NVCACGTG	1e0	-1.075e+00	0.7060	43.0	5.47%	1263.7	5.11%
Gfi1b(Zf)/HPC7-Gfi1b-ChIP-Seq(GSE22178)/Homer	MAATCACTGC	1e0	-1.056e+00	0.7157	21.0	2.67%	597.4	2.41%
NFkB-p50,p52(RHD)/Monocyte-p50-ChIP-Chip(Schreiber_et_al.)/Homer	GGGGGAATCCCC	1e0	-1.052e+00	0.7157	4.0	0.51%	94.9	0.38%
ZNF189(Zf)/HEK293-ZNF189.GFP-ChIP-Seq(GSE58341)/Homer	TGGAACAGMA	1e0	-1.034e+00	0.7231	34.0	4.33%	995.4	4.02%
ZNF467(Zf)/HEK293-ZNF467.GFP-ChIP-Seq(GSE58341)/Homer	TGGGGAAGGGCM	1e0	-1.031e+00	0.7231	31.0	3.94%	904.7	3.65%
NRF1(NRF)/MCF7-NRF1-ChIP-Seq(Unpublished)/Homer	CTGCGCATGCGC	1e0	-9.906e-01	0.7427	5.0	0.64%	126.3	0.51%
ZNF692(Zf)/HEK293-ZNF692.GFP-ChIP-Seq(GSE58341)/Homer	GTGGGCCCCA	1e0	-9.906e-01	0.7427	5.0	0.64%	126.0	0.51%
E2F1(E2F)/Hela-E2F1-ChIP-Seq(GSE22478)/Homer	CWGGCGGGAA	1e0	-9.751e-01	0.7502	10.0	1.27%	275.7	1.11%
c-Myc(bHLH)/mES-cMyc-ChIP-Seq(GSE11431)/Homer	VVCCACGTGG	1e0	-9.748e-01	0.7502	12.0	1.53%	335.8	1.36%
EBNA1(EBV-virus)/Raji-EBNA1-ChIP-Seq(GSE30709)/Homer	GGYAGCAYDTGCTDCCCNNN	1e0	-9.702e-01	0.7502	1.0	0.13%	15.8	0.06%
GATA3(Zf)/iTreg-Gata3-ChIP-Seq(GSE20898)/Homer	AGATAASR	1e0	-9.692e-01	0.7502	66.0	8.40%	1993.7	8.05%
Gata6(Zf)/HUG1N-GATA6-ChIP-Seq(GSE51936)/Homer	YCTTATCTBN	1e0	-9.653e-01	0.7502	36.0	4.58%	1068.1	4.31%
Hoxc9(Homeobox)/Ainv15-Hoxc9-ChIP-Seq(GSE21812)/Homer	GGCCATAAATCA	1e0	-9.634e-01	0.7502	21.0	2.67%	609.8	2.46%
BMAL1(bHLH)/Liver-Bmal1-ChIP-Seq(GSE39860)/Homer	GNCACGTG	1e0	-9.630e-01	0.7502	48.0	6.11%	1438.9	5.81%
Gata2(Zf)/K562-GATA2-ChIP-Seq(GSE18829)/Homer	BBCTTATCTS	1e0	-9.564e-01	0.7502	23.0	2.93%	671.8	2.71%
Mef2c(MADS)/GM12878-Mef2c-ChIP-Seq(GSE32465)/Homer	DCYAAAAATAGM	1e0	-9.383e-01	0.7502	22.0	2.80%	643.9	2.60%
Lhx3(Homeobox)/Neuron-Lhx3-ChIP-Seq(GSE31456)/Homer	ADBTAATTAR	1e0	-9.308e-01	0.7502	80.0	10.18%	2437.2	9.85%
VDR(NR),DR3/GM10855-VDR+vitD-ChIP-Seq(GSE22484)/Homer	ARAGGTCANWGAGTTCANNN	1e0	-9.207e-01	0.7511	6.0	0.76%	160.3	0.65%
FOXK2(Forkhead)/U2OS-FOXK2-ChIP-Seq(E-MTAB-2204)/Homer	SCHTGTTTACAT	1e0	-9.035e-01	0.7602	22.0	2.80%	648.2	2.62%
GLI3(Zf)/Limb-GLI3-ChIP-Chip(GSE11077)/Homer	CGTGGGTGGTCC	1e0	-8.944e-01	0.7632	3.0	0.38%	73.3	0.30%
Pknox1(Homeobox)/ES-Prep1-ChIP-Seq(GSE63282)/Homer	SCTGTCAVTCAV	1e0	-8.933e-01	0.7632	7.0	0.89%	192.3	0.78%
GFY(?)/Promoter/Homer	ACTACAATTCCC	1e0	-8.836e-01	0.7636	4.0	0.51%	103.5	0.42%
CDX4(Homeobox)/ZebrafishEmbryos-Cdx4.Myc-ChIP-Seq(GSE48254)/Homer	NGYCATAAAWCH	1e0	-8.144e-01	0.8142	39.0	4.96%	1190.1	4.81%
X-box(HTH)/NPC-H3K4me1-ChIP-Seq(GSE16256)/Homer	GGTTGCCATGGCAA	1e0	-8.024e-01	0.8199	4.0	0.51%	108.8	0.44%
MafF(bZIP)/HepG2-MafF-ChIP-Seq(GSE31477)/Homer	HWWGTCAGCAWWTTT	1e0	-8.016e-01	0.8199	10.0	1.27%	292.6	1.18%
Pdx1(Homeobox)/Islet-Pdx1-ChIP-Seq(SRA008281)/Homer	YCATYAATCA	1e0	-7.947e-01	0.8199	38.0	4.83%	1163.9	4.70%
RAR:RXR(NR),DR5/ES-RAR-ChIP-Seq(GSE56893)/Homer	RGGTCADNNAGAGGTCAV	1e0	-7.916e-01	0.8199	1.0	0.13%	19.9	0.08%
Hand2(bHLH)/Mesoderm-Hand2-ChIP-Seq(GSE61475)/Homer	TGACANARRCCAGRC	1e0	-7.905e-01	0.8199	16.0	2.04%	479.7	1.94%
Rbpj1(?)/Panc1-Rbpj1-ChIP-Seq(GSE47459)/Homer	HTTTCCCASG	1e0	-7.880e-01	0.8199	57.0	7.25%	1758.1	7.10%
MafA(bZIP)/Islet-MafA-ChIP-Seq(GSE30298)/Homer	TGCTGACTCA	1e0	-7.675e-01	0.8242	21.0	2.67%	638.0	2.58%
PRDM9(Zf)/Testis-DMC1-ChIP-Seq(GSE35498)/Homer	ADGGYAGYAGCATCT	1e0	-7.589e-01	0.8273	13.0	1.65%	390.4	1.58%
Lhx2(Homeobox)/HFSC-Lhx2-ChIP-Seq(GSE48068)/Homer	TAATTAGN	1e0	-7.486e-01	0.8318	50.0	6.36%	1549.6	6.26%
AMYB(HTH)/Testes-AMYB-ChIP-Seq(GSE44588)/Homer	TGGCAGTTGG	1e0	-7.387e-01	0.8361	54.0	6.87%	1678.0	6.78%
Isl1(Homeobox)/Neuron-Isl1-ChIP-Seq(GSE31456)/Homer	CTAATKGV	1e0	-7.272e-01	0.8416	76.0	9.67%	2371.8	9.58%
ZNF711(Zf)/SHSY5Y-ZNF711-ChIP-Seq(GSE20673)/Homer	AGGCCTAG	1e0	-7.249e-01	0.8416	67.0	8.52%	2089.4	8.44%
Ets1-distal(ETS)/CD4+-PolII-ChIP-Seq(Barski_et_al.)/Homer	MACAGGAAGT	1e0	-7.097e-01	0.8484	9.0	1.15%	271.5	1.10%
Eomes(T-box)/H9-Eomes-ChIP-Seq(GSE26097)/Homer	ATTAACACCT	1e0	-6.925e-01	0.8590	82.0	10.43%	2571.1	10.39%
ZSCAN22(Zf)/HEK293-ZSCAN22.GFP-ChIP-Seq(GSE58341)/Homer	SMCAGTCWGAKGGAGGAGGC	1e0	-6.898e-01	0.8590	2.0	0.25%	53.9	0.22%
COUP-TFII(NR)/Artia-Nr2f2-ChIP-Seq(GSE46497)/Homer	AGRGGTCA	1e0	-6.837e-01	0.8590	46.0	5.85%	1440.7	5.82%
Reverb(NR),DR2/RAW-Reverba.biotin-ChIP-Seq(GSE45914)/Homer	GTRGGTCASTGGGTCA	1e0	-6.803e-01	0.8590	3.0	0.38%	85.3	0.34%
Foxa3(Forkhead)/Liver-Foxa3-ChIP-Seq(GSE77670)/Homer	BSNTGTTTACWYWGN	1e0	-6.687e-01	0.8634	11.0	1.40%	339.2	1.37%
IRF4(IRF)/GM12878-IRF4-ChIP-Seq(GSE32465)/Homer	ACTGAAACCA	1e0	-6.651e-01	0.8634	15.0	1.91%	466.7	1.89%
Pbx3(Homeobox)/GM12878-PBX3-ChIP-Seq(GSE32465)/Homer	SCTGTCAMTCAN	1e0	-6.564e-01	0.8661	6.0	0.76%	182.8	0.74%
CEBP:CEBP(bZIP)/MEF-Chop-ChIP-Seq(GSE35681)/Homer	NTNATGCAAYMNNHTGMAAY	1e0	-6.491e-01	0.8685	4.0	0.51%	119.7	0.48%
ETS1(ETS)/Jurkat-ETS1-ChIP-Seq(GSE17954)/Homer	ACAGGAAGTG	1e0	-6.452e-01	0.8685	39.0	4.96%	1229.7	4.97%
FOXK1(Forkhead)/HEK293-FOXK1-ChIP-Seq(GSE51673)/Homer	NVWTGTTTAC	1e0	-6.437e-01	0.8685	40.0	5.09%	1261.6	5.10%
HIF2a(bHLH)/785_O-HIF2a-ChIP-Seq(GSE34871)/Homer	GCACGTACCC	1e0	-6.404e-01	0.8685	10.0	1.27%	311.6	1.26%
Gata1(Zf)/K562-GATA1-ChIP-Seq(GSE18829)/Homer	SAGATAAGRV	1e0	-6.393e-01	0.8685	19.0	2.42%	597.5	2.41%
Tbx20(T-box)/Heart-Tbx20-ChIP-Seq(GSE29636)/Homer	GGTGYTGACAGS	1e0	-6.367e-01	0.8685	5.0	0.64%	152.9	0.62%
ZNF165(Zf)/WHIM12-ZNF165-ChIP-Seq(GSE65937)/Homer	AAGGKGRCGCAGGCA	1e0	-6.367e-01	0.8685	4.0	0.51%	120.6	0.49%
NFY(CCAAT)/Promoter/Homer	RGCCAATSRG	1e0	-6.355e-01	0.8685	25.0	3.18%	788.6	3.19%
SpiB(ETS)/OCILY3-SPIB-ChIP-Seq(GSE56857)/Homer	AAAGRGGAAGTG	1e0	-6.338e-01	0.8685	9.0	1.15%	280.3	1.13%
Hnf1(Homeobox)/Liver-Foxa2-Chip-Seq(GSE25694)/Homer	GGTTAAWCATTAA	1e0	-6.265e-01	0.8685	7.0	0.89%	217.4	0.88%
ZFX(Zf)/mES-Zfx-ChIP-Seq(GSE11431)/Homer	AGGCCTRG	1e0	-6.258e-01	0.8685	45.0	5.73%	1424.2	5.75%
Rfx1(HTH)/NPC-H3K4me1-ChIP-Seq(GSE16256)/Homer	KGTTGCCATGGCAA	1e0	-6.168e-01	0.8685	6.0	0.76%	186.6	0.75%
IRF8(IRF)/BMDM-IRF8-ChIP-Seq(GSE77884)/Homer	GRAASTGAAAST	1e0	-6.163e-01	0.8685	13.0	1.65%	410.2	1.66%
FoxL2(Forkhead)/Ovary-FoxL2-ChIP-Seq(GSE60858)/Homer	WWTRTAAACAVG	1e0	-6.134e-01	0.8685	36.0	4.58%	1142.2	4.61%
TR4(NR),DR1/Hela-TR4-ChIP-Seq(GSE24685)/Homer	GAGGTCAAAGGTCA	1e0	-5.817e-01	0.8732	2.0	0.25%	59.0	0.24%
Pax7(Paired,Homeobox)/Myoblast-Pax7-ChIP-Seq(GSE25064)/Homer	TAATCAATTA	1e0	-5.781e-01	0.8732	4.0	0.51%	125.1	0.51%
Rfx2(HTH)/LoVo-RFX2-ChIP-Seq(GSE49402)/Homer	GTTGCCATGGCAACM	1e0	-5.681e-01	0.8777	3.0	0.38%	93.4	0.38%
DUX4(Homeobox)/Myoblasts-DUX4.V5-ChIP-Seq(GSE75791)/Homer	NWTAAYCYAATCAWN	1e0	-5.656e-01	0.8777	2.0	0.25%	60.7	0.25%
SCL(bHLH)/HPC7-Scl-ChIP-Seq(GSE13511)/Homer	AVCAGCTG	1e0	-5.588e-01	0.8783	175.0	22.26%	5565.6	22.48%
Esrrb(NR)/mES-Esrrb-ChIP-Seq(GSE11431)/Homer	KTGACCTTGA	1e0	-5.556e-01	0.8783	14.0	1.78%	452.6	1.83%
Tcf3(HMG)/mES-Tcf3-ChIP-Seq(GSE11724)/Homer	ASWTCAAAGG	1e0	-5.249e-01	0.9010	8.0	1.02%	262.2	1.06%
Pax7(Paired,Homeobox),longest/Myoblast-Pax7-ChIP-Seq(GSE25064)/Homer	NTAATTDGCYAATTANNWWD	1e0	-5.201e-01	0.9016	2.0	0.25%	63.7	0.26%
THRb(NR)/Liver-NR1A2-ChIP-Seq(GSE52613)/Homer	TRAGGTCA	1e0	-5.171e-01	0.9016	130.0	16.54%	4163.0	16.82%
Etv2(ETS)/ES-ER71-ChIP-Seq(GSE59402)/Homer(0.967)	NNAYTTCCTGHN	1e0	-5.170e-01	0.9016	35.0	4.45%	1136.1	4.59%
Nkx2.2(Homeobox)/NPC-Nkx2.2-ChIP-Seq(GSE61673)/Homer	BTBRAGTGSN	1e0	-5.078e-01	0.9016	62.0	7.89%	2003.7	8.09%
ZNF675(Zf)/HEK293-ZNF675.GFP-ChIP-Seq(GSE58341)/Homer	ARGAGGMCAAAATGW	1e0	-5.048e-01	0.9016	4.0	0.51%	132.7	0.54%
Twist(bHLH)/HMLE-TWIST1-ChIP-Seq(Chang_et_al)/Homer	VCAKCTGGNNNCCAGMTGBN	1e0	-4.964e-01	0.9043	3.0	0.38%	99.3	0.40%
ELF5(ETS)/T47D-ELF5-ChIP-Seq(GSE30407)/Homer	ACVAGGAAGT	1e0	-4.835e-01	0.9124	28.0	3.56%	921.0	3.72%
GATA3(Zf),DR8/iTreg-Gata3-ChIP-Seq(GSE20898)/Homer	AGATSTNDNNDSAGATAASN	1e0	-4.786e-01	0.9132	2.0	0.25%	66.1	0.27%
GRE(NR),IR3/A549-GR-ChIP-Seq(GSE32465)/Homer	NRGVACABNVTGTYCY	1e0	-4.747e-01	0.9132	3.0	0.38%	101.5	0.41%
PU.1(ETS)/ThioMac-PU.1-ChIP-Seq(GSE21512)/Homer	AGAGGAAGTG	1e0	-4.675e-01	0.9159	16.0	2.04%	534.1	2.16%
OCT:OCT(POU,Homeobox,IR1)/NPC-Brn2-ChIP-Seq(GSE35496)/Homer	ATGAATWATTCATGA	1e0	-4.675e-01	0.9159	1.0	0.13%	31.8	0.13%
ZNF264(Zf)/HEK293-ZNF264.GFP-ChIP-Seq(GSE58341)/Homer	RGGGCACTAACY	1e0	-4.662e-01	0.9159	17.0	2.16%	567.1	2.29%
BMYB(HTH)/Hela-BMYB-ChIP-Seq(GSE27030)/Homer	NHAACBGYYV	1e0	-4.620e-01	0.9159	52.0	6.62%	1700.9	6.87%
RORgt(NR)/EL4-RORgt.Flag-ChIP-Seq(GSE56019)/Homer	AAYTAGGTCA	1e0	-4.538e-01	0.9159	3.0	0.38%	103.2	0.42%
ZNF136(Zf)/HEK293-ZNF136.GFP-ChIP-Seq(GSE58341)/Homer	YTKGATAHAGTATTCTWGGTNGGCA	1e0	-4.438e-01	0.9195	3.0	0.38%	104.3	0.42%
PAX5(Paired,Homeobox)/GM12878-PAX5-ChIP-Seq(GSE32465)/Homer	GCAGCCAAGCRTGACH	1e0	-4.385e-01	0.9208	8.0	1.02%	275.5	1.11%
FOXP1(Forkhead)/H9-FOXP1-ChIP-Seq(GSE31006)/Homer	NYYTGTTTACHN	1e0	-4.357e-01	0.9208	13.0	1.65%	442.4	1.79%
Nkx2.5(Homeobox)/HL1-Nkx2.5.biotin-ChIP-Seq(GSE21529)/Homer	RRSCACTYAA	1e0	-4.333e-01	0.9208	72.0	9.16%	2354.6	9.51%
LXRE(NR),DR4/RAW-LXRb.biotin-ChIP-Seq(GSE21512)/Homer	RGGTTACTANAGGTCA	1e0	-4.315e-01	0.9208	1.0	0.13%	33.1	0.13%
Barx1(Homeobox)/Stomach-Barx1.3xFlag-ChIP-Seq(GSE69483)/Homer	AAACMATTAN	1e0	-4.182e-01	0.9251	19.0	2.42%	644.0	2.60%
Nkx2.1(Homeobox)/LungAC-Nkx2.1-ChIP-Seq(GSE43252)/Homer	RSCACTYRAG	1e0	-4.152e-01	0.9251	95.0	12.09%	3100.4	12.53%
HOXD13(Homeobox)/Chicken-Hoxd13-ChIP-Seq(GSE38910)/Homer	NCYAATAAAA	1e0	-4.061e-01	0.9292	49.0	6.23%	1625.5	6.57%
EBF1(EBF)/Near-E2A-ChIP-Seq(GSE21512)/Homer	GTCCCCWGGGGA	1e0	-3.971e-01	0.9340	35.0	4.45%	1174.3	4.74%
Sox9(HMG)/Limb-SOX9-ChIP-Seq(GSE73225)/Homer	AGGVNCCTTTGT	1e0	-3.847e-01	0.9420	21.0	2.67%	719.2	2.91%
Nr5a2(NR)/Pancreas-LRH1-ChIP-Seq(GSE34295)/Homer	BTCAAGGTCA	1e0	-3.804e-01	0.9425	15.0	1.91%	521.9	2.11%
CArG(MADS)/PUER-Srf-ChIP-Seq(Sullivan_et_al.)/Homer	CCATATATGGNM	1e0	-3.755e-01	0.9436	8.0	1.02%	286.7	1.16%
Smad2(MAD)/ES-SMAD2-ChIP-Seq(GSE29422)/Homer	CTGTCTGG	1e0	-3.726e-01	0.9436	47.0	5.98%	1574.6	6.36%
DMRT1(DM)/Testis-DMRT1-ChIP-Seq(GSE64892)/Homer	TWGHWACAWTGTWDC	1e0	-3.702e-01	0.9436	8.0	1.02%	287.9	1.16%
Foxf1(Forkhead)/Lung-Foxf1-ChIP-Seq(GSE77951)/Homer	WWATRTAAACAN	1e0	-3.697e-01	0.9436	38.0	4.83%	1282.4	5.18%
RBPJ:Ebox(?,bHLH)/Panc1-Rbpj1-ChIP-Seq(GSE47459)/Homer	GGGRAARRGRMCAGMTG	1e0	-3.649e-01	0.9436	8.0	1.02%	289.0	1.17%
YY1(Zf)/Promoter/Homer	CAAGATGGCGGC	1e0	-3.640e-01	0.9436	2.0	0.25%	76.2	0.31%
NFAT:AP1(RHD,bZIP)/Jurkat-NFATC1-ChIP-Seq(Jolma_et_al.)/Homer	SARTGGAAAAWRTGAGTCAB	1e0	-3.584e-01	0.9436	5.0	0.64%	185.8	0.75%
RFX(HTH)/K562-RFX3-ChIP-Seq(SRA012198)/Homer	CGGTTGCCATGGCAAC	1e0	-3.542e-01	0.9436	2.0	0.25%	77.1	0.31%
Foxh1(Forkhead)/hESC-FOXH1-ChIP-Seq(GSE29422)/Homer	NNTGTGGATTSS	1e0	-3.535e-01	0.9436	20.0	2.54%	695.3	2.81%
Smad4(MAD)/ESC-SMAD4-ChIP-Seq(GSE29422)/Homer	VBSYGTCTGG	1e0	-3.532e-01	0.9436	48.0	6.11%	1615.4	6.53%
CHR(?)/Hela-CellCycle-Expression/Homer	SRGTTTCAAA	1e0	-3.438e-01	0.9436	24.0	3.05%	831.6	3.36%
bZIP:IRF(bZIP,IRF)/Th17-BatF-ChIP-Seq(GSE39756)/Homer	NAGTTTCABTHTGACTNW	1e0	-3.428e-01	0.9436	14.0	1.78%	497.1	2.01%
Brn1(POU,Homeobox)/NPC-Brn1-ChIP-Seq(GSE35496)/Homer	TATGCWAATBAV	1e0	-3.421e-01	0.9436	9.0	1.15%	327.5	1.32%
IRF:BATF(IRF:bZIP)/pDC-Irf8-ChIP-Seq(GSE66899)/Homer	CTTTCANTATGACTV	1e0	-3.391e-01	0.9436	3.0	0.38%	116.5	0.47%
TATA-Box(TBP)/Promoter/Homer	CCTTTTAWAGSC	1e0	-3.363e-01	0.9436	44.0	5.60%	1492.1	6.03%
Srebp1a(bHLH)/HepG2-Srebp1a-ChIP-Seq(GSE31477)/Homer	RTCACSCCAY	1e0	-3.349e-01	0.9436	4.0	0.51%	153.1	0.62%
Prop1(Homeobox)/GHFT1-PROP1.biotin-ChIP-Seq(GSE77302)/Homer	NTAATBNAATTA	1e0	-3.315e-01	0.9436	30.0	3.82%	1034.2	4.18%
HOXA2(Homeobox)/mES-Hoxa2-ChIP-Seq(Donaldson_et_al.)/Homer	GYCATCMATCAT	1e0	-3.266e-01	0.9436	2.0	0.25%	80.1	0.32%
ETS:E-box(ETS,bHLH)/HPC7-Scl-ChIP-Seq(GSE22178)/Homer	AGGAARCAGCTG	1e0	-3.179e-01	0.9436	2.0	0.25%	81.1	0.33%
ERE(NR),IR3/MCF7-ERa-ChIP-Seq(Unpublished)/Homer	VAGGTCACNSTGACC	1e0	-3.157e-01	0.9436	4.0	0.51%	156.3	0.63%
Erra(NR)/HepG2-Erra-ChIP-Seq(GSE31477)/Homer	CAAAGGTCAG	1e0	-3.084e-01	0.9436	58.0	7.38%	1963.1	7.93%
Unknown-ESC-element(?)/mES-Nanog-ChIP-Seq(GSE11724)/Homer	CACAGCAGGGGG	1e0	-2.999e-01	0.9436	15.0	1.91%	543.2	2.19%
HNF4a(NR),DR1/HepG2-HNF4a-ChIP-Seq(GSE25021)/Homer	CARRGKBCAAAGTYCA	1e0	-2.997e-01	0.9436	11.0	1.40%	406.7	1.64%
SF1(NR)/H295R-Nr5a1-ChIP-Seq(GSE44220)/Homer	CAAGGHCANV	1e0	-2.793e-01	0.9559	7.0	0.89%	271.9	1.10%
Fox:Ebox(Forkhead,bHLH)/Panc1-Foxa2-ChIP-Seq(GSE47459)/Homer	NNNVCTGWGYAAACASN	1e0	-2.710e-01	0.9605	26.0	3.31%	925.3	3.74%
Tcf4(HMG)/Hct116-Tcf4-ChIP-Seq(SRA012054)/Homer	ASATCAAAGGVA	1e0	-2.601e-01	0.9677	12.0	1.53%	452.4	1.83%
E2F6(E2F)/Hela-E2F6-ChIP-Seq(GSE31477)/Homer	GGCGGGAARN	1e0	-2.467e-01	0.9774	16.0	2.04%	595.0	2.40%
PRDM14(Zf)/H1-PRDM14-ChIP-Seq(GSE22767)/Homer	RGGTCTCTAACY	1e0	-2.425e-01	0.9781	7.0	0.89%	280.4	1.13%
FOXA1:AR(Forkhead,NR)/LNCAP-AR-ChIP-Seq(GSE27824)/Homer	AGTAAACAAAAAAGAACAND	1e0	-2.366e-01	0.9806	1.0	0.13%	49.4	0.20%
NRF(NRF)/Promoter/Homer	STGCGCATGCGC	1e0	-2.312e-01	0.9826	3.0	0.38%	133.5	0.54%
Tgif2(Homeobox)/mES-Tgif2-ChIP-Seq(GSE55404)/Homer	TGTCANYT	1e0	-2.270e-01	0.9833	107.0	13.61%	3614.1	14.60%
Srebp2(bHLH)/HepG2-Srebp2-ChIP-Seq(GSE31477)/Homer	CGGTCACSCCAC	1e0	-2.125e-01	0.9943	2.0	0.25%	96.9	0.39%
E2F4(E2F)/K562-E2F4-ChIP-Seq(GSE31477)/Homer	GGCGGGAAAH	1e0	-2.089e-01	0.9945	15.0	1.91%	575.6	2.33%
Oct4(POU,Homeobox)/mES-Oct4-ChIP-Seq(GSE11431)/Homer	ATTTGCATAW	1e0	-2.063e-01	0.9945	14.0	1.78%	541.3	2.19%
Mouse_Recombination_Hotspot(Zf)/Testis-DMC1-ChIP-Seq(GSE24438)/Homer	ACTYKNATTCGTGNTACTTC	1e0	-1.981e-01	0.9953	1.0	0.13%	54.8	0.22%
ZNF317(Zf)/HEK293-ZNF317.GFP-ChIP-Seq(GSE58341)/Homer	GTCWGCTGTYYCTCT	1e0	-1.981e-01	0.9953	1.0	0.13%	54.9	0.22%
Oct2(POU,Homeobox)/Bcell-Oct2-ChIP-Seq(GSE21512)/Homer	ATATGCAAAT	1e0	-1.905e-01	0.9995	8.0	1.02%	332.1	1.34%
Cdx2(Homeobox)/mES-Cdx2-ChIP-Seq(GSE14586)/Homer	GYMATAAAAH	1e0	-1.893e-01	0.9995	27.0	3.44%	999.4	4.04%
HNF6(Homeobox)/Liver-Hnf6-ChIP-Seq(ERP000394)/Homer	NTATYGATCH	1e0	-1.885e-01	0.9995	16.0	2.04%	619.0	2.50%
Oct6(POU,Homeobox)/NPC-Pou3f1-ChIP-Seq(GSE35496)/Homer	WATGCAAATGAG	1e0	-1.776e-01	1.0000	12.0	1.53%	482.4	1.95%
Cux2(Homeobox)/Liver-Cux2-ChIP-Seq(GSE35985)/Homer	HNRAATCAAT	1e0	-1.749e-01	1.0000	13.0	1.65%	519.7	2.10%
PPARE(NR),DR1/3T3L1-Pparg-ChIP-Seq(GSE13511)/Homer	TGACCTTTGCCCCA	1e0	-1.711e-01	1.0000	23.0	2.93%	872.8	3.53%
Nur77(NR)/K562-NR4A1-ChIP-Seq(GSE31363)/Homer	TGACCTTTNCNT	1e0	-1.643e-01	1.0000	3.0	0.38%	148.4	0.60%
Brachyury(T-box)/Mesoendoderm-Brachyury-ChIP-exo(GSE54963)/Homer	ANTTMRCASBNNNGTGYKAAN	1e0	-1.560e-01	1.0000	4.0	0.51%	191.8	0.77%
TCFL2(HMG)/K562-TCF7L2-ChIP-Seq(GSE29196)/Homer	ACWTCAAAGG	1e0	-1.552e-01	1.0000	1.0	0.13%	61.1	0.25%
IRF1(IRF)/PBMC-IRF1-ChIP-Seq(GSE43036)/Homer	GAAAGTGAAAGT	1e0	-1.529e-01	1.0000	4.0	0.51%	192.1	0.78%
Six1(Homeobox)/Myoblast-Six1-ChIP-Chip(GSE20150)/Homer	GKVTCADRTTWC	1e0	-1.518e-01	1.0000	5.0	0.64%	232.6	0.94%
Brn2(POU,Homeobox)/NPC-Brn2-ChIP-Seq(GSE35496)/Homer	ATGAATATTC	1e0	-1.499e-01	1.0000	3.0	0.38%	153.0	0.62%
Pitx1:Ebox(Homeobox,bHLH)/Hindlimb-Pitx1-ChIP-Seq(GSE41591)/Homer	YTAATTRAWWCCAGATGT	1e0	-1.490e-01	1.0000	5.0	0.64%	233.5	0.94%
Pax8(Paired,Homeobox)/Thyroid-Pax8-ChIP-Seq(GSE26938)/Homer	GTCATGCHTGRCTGS	1e0	-1.407e-01	1.0000	5.0	0.64%	236.9	0.96%
Foxo3(Forkhead)/U2OS-Foxo3-ChIP-Seq(E-MTAB-2701)/Homer	DGTAAACA	1e0	-1.384e-01	1.0000	23.0	2.93%	893.2	3.61%
Mef2b(MADS)/HEK293-Mef2b.V5-ChIP-Seq(GSE67450)/Homer	GCTATTTTTGGM	1e0	-1.381e-01	1.0000	31.0	3.94%	1171.5	4.73%
ZNF669(Zf)/HEK293-ZNF669.GFP-ChIP-Seq(GSE58341)/Homer	GARTGGTCATCGCCC	1e0	-1.308e-01	1.0000	1.0	0.13%	66.6	0.27%
Foxo1(Forkhead)/RAW-Foxo1-ChIP-Seq(Fan_et_al.)/Homer	CTGTTTAC	1e0	-1.306e-01	1.0000	62.0	7.89%	2229.5	9.01%
Tgif1(Homeobox)/mES-Tgif1-ChIP-Seq(GSE55404)/Homer	YTGWCADY	1e0	-1.289e-01	1.0000	93.0	11.83%	3261.2	13.17%
RXR(NR),DR1/3T3L1-RXR-ChIP-Seq(GSE13511)/Homer	TAGGGCAAAGGTCA	1e0	-1.237e-01	1.0000	27.0	3.44%	1044.1	4.22%
Smad3(MAD)/NPC-Smad3-ChIP-Seq(GSE36673)/Homer	TWGTCTGV	1e0	-1.214e-01	1.0000	91.0	11.58%	3205.4	12.95%
RAR:RXR(NR),DR5/ES-RAR-ChIP-Seq(GSE56893)/Homer	AGGTCAAGGTCA	1e0	-1.182e-01	1.0000	1.0	0.13%	69.2	0.28%
PBX1(Homeobox)/MCF7-PBX1-ChIP-Seq(GSE28007)/Homer	GSCTGTCACTCA	1e0	-1.105e-01	1.0000	1.0	0.13%	71.7	0.29%
ZNF143|STAF(Zf)/CUTLL-ZNF143-ChIP-Seq(GSE29600)/Homer	ATTTCCCAGVAKSCY	1e0	-1.104e-01	1.0000	7.0	0.89%	328.4	1.33%
PU.1-IRF(ETS:IRF)/Bcell-PU.1-ChIP-Seq(GSE21512)/Homer	MGGAAGTGAAAC	1e0	-1.041e-01	1.0000	48.0	6.11%	1787.0	7.22%
Tbr1(T-box)/Cortex-Tbr1-ChIP-Seq(GSE71384)/Homer	AAGGTGTKAA	1e0	-1.039e-01	1.0000	42.0	5.34%	1582.8	6.39%
PAX6(Paired,Homeobox)/Forebrain-Pax6-ChIP-Seq(GSE66961)/Homer	NGTGTTCAVTSAAGCGKAAA	1e0	-1.033e-01	1.0000	1.0	0.13%	73.6	0.30%
ISRE(IRF)/ThioMac-LPS-Expression(GSE23622)/Homer	AGTTTCASTTTC	1e0	-9.988e-02	1.0000	1.0	0.13%	74.6	0.30%
Arnt:Ahr(bHLH)/MCF7-Arnt-ChIP-Seq(Lo_et_al.)/Homer	TBGCACGCAA	1e0	-9.807e-02	1.0000	12.0	1.53%	526.7	2.13%
Nr5a2(NR)/mES-Nr5a2-ChIP-Seq(GSE19019)/Homer	BTCAAGGTCA	1e0	-9.179e-02	1.0000	8.0	1.02%	378.3	1.53%
Six2(Homeobox)/NephronProgenitor-Six2-ChIP-Seq(GSE39837)/Homer	GWAAYHTGAKMC	1e0	-8.096e-02	1.0000	29.0	3.69%	1157.3	4.68%
PAX5(Paired,Homeobox),condensed/GM12878-PAX5-ChIP-Seq(GSE32465)/Homer	GTCACGCTCSCTGM	1e0	-7.910e-02	1.0000	1.0	0.13%	81.8	0.33%
IRF3(IRF)/BMDM-Irf3-ChIP-Seq(GSE67343)/Homer	AGTTTCAKTTTC	1e0	-7.678e-02	1.0000	9.0	1.15%	428.5	1.73%
Meis1(Homeobox)/MastCells-Meis1-ChIP-Seq(GSE48085)/Homer	VGCTGWCAVB	1e0	-6.711e-02	1.0000	39.0	4.96%	1529.0	6.18%
PU.1:IRF8(ETS:IRF)/pDC-Irf8-ChIP-Seq(GSE66899)/Homer	GGAAGTGAAAST	1e0	-6.579e-02	1.0000	4.0	0.51%	232.6	0.94%
GATA:SCL(Zf,bHLH)/Ter119-SCL-ChIP-Seq(GSE18720)/Homer	CRGCTGBNGNSNNSAGATAA	1e0	-5.689e-02	1.0000	1.0	0.13%	91.4	0.37%
Nkx3.1(Homeobox)/LNCaP-Nkx3.1-ChIP-Seq(GSE28264)/Homer	AAGCACTTAA	1e0	-5.307e-02	1.0000	67.0	8.52%	2522.8	10.19%
GATA3(Zf),DR4/iTreg-Gata3-ChIP-Seq(GSE20898)/Homer	AGATGKDGAGATAAG	1e0	-4.240e-02	1.0000	1.0	0.13%	100.6	0.41%
Slug(Zf)/Mesoderm-Snai2-ChIP-Seq(GSE61475)/Homer	SNGCACCTGCHS	1e0	-3.676e-02	1.0000	10.0	1.27%	513.2	2.07%
EBF(EBF)/proBcell-EBF-ChIP-Seq(GSE21978)/Homer	DGTCCCYRGGGA	1e0	-3.547e-02	1.0000	3.0	0.38%	213.1	0.86%
Bapx1(Homeobox)/VertebralCol-Bapx1-ChIP-Seq(GSE36672)/Homer	TTRAGTGSYK	1e0	-3.317e-02	1.0000	57.0	7.25%	2235.8	9.03%
LRF(Zf)/Erythroblasts-ZBTB7A-ChIP-Seq(GSE74977)/Homer	AAGACCCYYN	1e0	-3.028e-02	1.0000	40.0	5.09%	1646.0	6.65%
Tbet(T-box)/CD8-Tbet-ChIP-Seq(GSE33802)/Homer	AGGTGTGAAM	1e0	-2.744e-02	1.0000	23.0	2.93%	1035.7	4.18%
Unknown(Homeobox)/Limb-p300-ChIP-Seq/Homer	SSCMATWAAA	1e0	-2.719e-02	1.0000	17.0	2.16%	808.6	3.27%
GRHL2(CP2)/HBE-GRHL2-ChIP-Seq(GSE46194)/Homer	AAACYKGTTWDACMRGTTTB	1e0	-2.713e-02	1.0000	5.0	0.64%	318.1	1.29%
HOXB13(Homeobox)/ProstateTumor-HOXB13-ChIP-Seq(GSE56288)/Homer	TTTTATKRGG	1e0	-2.303e-02	1.0000	31.0	3.94%	1346.5	5.44%
Nanog(Homeobox)/mES-Nanog-ChIP-Seq(GSE11724)/Homer	RGCCATTAAC	1e0	-1.915e-02	1.0000	147.0	18.70%	5358.5	21.65%
OCT4-SOX2-TCF-NANOG(POU,Homeobox,HMG)/mES-Oct4-ChIP-Seq(GSE11431)/Homer	ATTTGCATAACAATG	1e0	-1.692e-02	1.0000	3.0	0.38%	243.6	0.98%
E2A(bHLH),near_PU.1/Bcell-PU.1-ChIP-Seq(GSE21512)/Homer	NVCACCTGBN	1e0	-1.119e-02	1.0000	31.0	3.94%	1407.4	5.69%
Tbox:Smad(T-box,MAD)/ESCd5-Smad2_3-ChIP-Seq(GSE29422)/Homer	AGGTGHCAGACA	1e0	-1.093e-02	1.0000	1.0	0.13%	142.8	0.58%
PRDM1(Zf)/Hela-PRDM1-ChIP-Seq(GSE31477)/Homer	ACTTTCACTTTC	1e0	-8.209e-03	1.0000	12.0	1.53%	684.4	2.76%
Oct4:Sox17(POU,Homeobox,HMG)/F9-Sox17-ChIP-Seq(GSE44553)/Homer	CCATTGTATGCAAAT	1e0	-4.746e-03	1.0000	1.0	0.13%	168.9	0.68%
ZEB1(Zf)/PDAC-ZEB1-ChIP-Seq(GSE64557)/Homer	VCAGGTRDRY	1e0	-7.940e-04	1.0000	36.0	4.58%	1799.8	7.27%
E2F(E2F)/Hela-CellCycle-Expression/Homer	TTSGCGCGAAAA	1e0	0.000e+00	1.0000	0.0	0.00%	61.1	0.25%
GFX(?)/Promoter/Homer	ATTCTCGCGAGA	1e0	0.000e+00	1.0000	0.0	0.00%	18.7	0.08%
OCT:OCT(POU,Homeobox)/NPC-Brn1-ChIP-Seq(GSE35496)/Homer	ATGAATATTCATGAG	1e0	0.000e+00	1.0000	0.0	0.00%	20.5	0.08%
Pax7(Paired,Homeobox),long/Myoblast-Pax7-ChIP-Seq(GSE25064)/Homer	TAATCHGATTAC	1e0	0.000e+00	1.0000	0.0	0.00%	47.2	0.19%
RARg(NR)/ES-RARg-ChIP-Seq(GSE30538)/Homer	AGGTCAAGGTCA	1e0	0.000e+00	1.0000	0.0	0.00%	11.9	0.05%
REST-NRSF(Zf)/Jurkat-NRSF-ChIP-Seq/Homer	GGMGCTGTCCATGGTGCTGA	1e0	0.000e+00	1.0000	0.0	0.00%	4.0	0.02%
T1ISRE(IRF)/ThioMac-Ifnb-Expression/Homer	ACTTTCGTTTCT	1e0	0.000e+00	1.0000	0.0	0.00%	17.6	0.07%
ZNF16(Zf)/HEK293-ZNF16.GFP-ChIP-Seq(GSE58341)/Homer	MACCTTCYATGGCTCCCTAKTGCCY	1e0	0.000e+00	1.0000	0.0	0.00%	6.5	0.03%
ZNF382(Zf)/HEK293-ZNF382.GFP-ChIP-Seq(GSE58341)/Homer	GNCTGTASTRNTGBCTCHTT	1e0	0.000e+00	1.0000	0.0	0.00%	9.2	0.04%
ZNF41(Zf)/HEK293-ZNF41.GFP-ChIP-Seq(GSE58341)/Homer	CCTCATGGTGYCYTWYTCCCTTGTG	1e0	0.000e+00	1.0000	0.0	0.00%	25.3	0.10%
ZNF528(Zf)/HEK293-ZNF528.GFP-ChIP-Seq(GSE58341)/Homer	AGAAATGACTTCCCT	1e0	0.000e+00	1.0000	0.0	0.00%	7.8	0.03%