Information for 1-AWGTAGTTKAAWR (Motif 4)

C G T A C G A T A C T G A C G T C G T A A C T G A C G T A C G T A C T G C G T A G T C A C G A T C T G A
Reverse Opposite:
A G C T C G T A A C G T C G A T G T A C C G T A C G T A T A G C A C G T C G T A A G T C C G T A A C G T
p-value:1e-12
log p-value:-2.861e+01
Information Content per bp:1.869
Number of Target Sequences with motif7.0
Percentage of Target Sequences with motif1.25%
Number of Background Sequences with motif4.7
Percentage of Background Sequences with motif0.01%
Average Position of motif in Targets38.1 +/- 22.5bp
Average Position of motif in Background69.6 +/- 22.0bp
Strand Bias (log2 ratio + to - strand density)0.4
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

PH0117.1_Nkx3-1/Jaspar

Match Rank:1
Score:0.68
Offset:-4
Orientation:forward strand
Alignment:----AWGTAGTTKAAWR
TACTAAGTACTTAAATG
 A C G T A C G T A C G T A C G T C G T A C G A T A C T G A C G T C G T A A C T G A C G T A C G T A C T G C G T A G T C A C G A T C T G A
C G A T C G A T G A T C C G A T C T G A C T G A A T C G A G C T T C G A A T G C G A C T G A C T G C T A C T G A C G T A C G A T A T C G

PH0116.1_Nkx2-9/Jaspar

Match Rank:2
Score:0.66
Offset:-4
Orientation:forward strand
Alignment:----AWGTAGTTKAAWR
TTTTAAGTACTTAAATT
 A C G T A C G T A C G T A C G T C G T A C G A T A C T G A C G T C G T A A C T G A C G T A C G T A C T G C G T A G T C A C G A T C T G A
C G A T G A C T G C A T C G A T C T G A C T G A A T C G A G C T C T G A A T G C G A C T G A C T T C G A C G T A G C T A C G A T G A C T

PH0112.1_Nkx2-3/Jaspar

Match Rank:3
Score:0.63
Offset:-4
Orientation:reverse strand
Alignment:----AWGTAGTTKAAWR
CNTTAAGTACTTAANG-
 A C G T A C G T A C G T A C G T C G T A C G A T A C T G A C G T C G T A A C T G A C G T A C G T A C T G C G T A G T C A C G A T C T G A
G A T C C G T A G A C T A G C T C T G A C T G A A T C G A G C T C T G A A T G C G A C T G A C T C G T A T C G A T C G A C T A G A C G T

RORA(var.2)/MA0072.1/Jaspar

Match Rank:4
Score:0.61
Offset:-3
Orientation:forward strand
Alignment:---AWGTAGTTKAAWR
TATAAGTAGGTCAA--
 A C G T A C G T A C G T C G T A C G A T A C T G A C G T C G T A A C T G A C G T A C G T A C T G C G T A G T C A C G A T C T G A
C G A T C G T A C G A T G T C A C G T A A T C G A C G T C T G A A C T G A C T G A C G T A G T C C G T A T C G A A C G T A C G T

PB0152.1_Nkx3-1_2/Jaspar

Match Rank:5
Score:0.58
Offset:-5
Orientation:forward strand
Alignment:-----AWGTAGTTKAAWR
ACTCCAAGTACTTGGAA-
 A C G T A C G T A C G T A C G T A C G T C G T A C G A T A C T G A C G T C G T A A C T G A C G T A C G T A C T G C G T A G T C A C G A T C T G A
T C G A G T A C C G A T A T G C T A G C C T G A C T G A C A T G A G C T T C G A G T A C G A C T G A C T A C T G T C A G T G C A G T C A A C G T

RUNX1(Runt)/Jurkat-RUNX1-ChIP-Seq(GSE29180)/Homer

Match Rank:6
Score:0.57
Offset:-1
Orientation:reverse strand
Alignment:-AWGTAGTTKAAWR
NNTGTGGTTT----
 A C G T C G T A C G A T A C T G A C G T C G T A A C T G A C G T A C G T A C T G C G T A G T C A C G A T C T G A
A C G T G A C T C A G T A C T G G A C T A C T G A C T G A G C T A G C T C G A T A C G T A C G T A C G T A C G T

PH0040.1_Hmbox1/Jaspar

Match Rank:7
Score:0.56
Offset:-3
Orientation:forward strand
Alignment:---AWGTAGTTKAAWR-
GAAAACTAGTTAACATC
 A C G T A C G T A C G T C G T A C G A T A C T G A C G T C G T A A C T G A C G T A C G T A C T G C G T A G T C A C G A T C T G A A C G T
T C A G G C T A C T G A C T G A C G T A A G T C A C G T C T G A C T A G A C G T G C A T C G T A C G T A A G T C C G T A C G A T A T G C

PH0168.1_Hnf1b/Jaspar

Match Rank:8
Score:0.56
Offset:-2
Orientation:reverse strand
Alignment:--AWGTAGTTKAAWR--
ANNNCTAGTTAACNGNN
 A C G T A C G T C G T A C G A T A C T G A C G T C G T A A C T G A C G T A C G T A C T G C G T A G T C A C G A T C T G A A C G T A C G T
C T G A T A G C C T A G T C A G A G T C G C A T T C G A C T A G C A G T C G A T C G T A C G T A A G T C T G C A C T A G T G A C G C A T

PH0038.1_Hlx/Jaspar

Match Rank:9
Score:0.55
Offset:1
Orientation:reverse strand
Alignment:AWGTAGTTKAAWR---
-TGTAATTAATTATGG
 C G T A C G A T A C T G A C G T C G T A A C T G A C G T A C G T A C T G C G T A G T C A C G A T C T G A A C G T A C G T A C G T
A C G T C A G T C T A G G A C T G C T A C G T A G A C T G A C T C G T A C T G A G C A T C G A T C T G A C A G T C A T G C A T G

HMBOX1/MA0895.1/Jaspar

Match Rank:10
Score:0.55
Offset:1
Orientation:forward strand
Alignment:AWGTAGTTKAAWR
-ACTAGTTAAC--
 C G T A C G A T A C T G A C G T C G T A A C T G A C G T A C G T A C T G C G T A G T C A C G A T C T G A
A C G T T G C A A G T C C G A T C T G A A T C G C G A T G C A T C G T A G T C A T A G C A C G T A C G T