Information for 6-CGGAGACGTTCCC (Motif 8)

G T A C A T C G A C T G C G T A A C T G T C G A G T A C A T C G A G C T A C G T A T G C A G T C G T A C
Reverse Opposite:
A C T G A C T G A T C G G T C A T C G A A T G C A C T G A G C T A G T C A C G T A G T C A T G C A C T G
p-value:1e-10
log p-value:-2.448e+01
Information Content per bp:1.814
Number of Target Sequences with motif7.0
Percentage of Target Sequences with motif0.84%
Number of Background Sequences with motif6.7
Percentage of Background Sequences with motif0.01%
Average Position of motif in Targets56.7 +/- 28.5bp
Average Position of motif in Background59.3 +/- 12.9bp
Strand Bias (log2 ratio + to - strand density)1.3
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

HES5/MA0821.1/Jaspar

Match Rank:1
Score:0.59
Offset:1
Orientation:forward strand
Alignment:CGGAGACGTTCCC
-CGGCACGTGCCA
 G T A C A T C G A C T G C G T A A C T G T C G A G T A C A T C G A G C T A C G T A T G C A G T C G T A C
A C G T G A T C T C A G T C A G A G T C C T G A G A T C C T A G A G C T A C T G A G T C A G T C C T G A

HEY2/MA0649.1/Jaspar

Match Rank:2
Score:0.57
Offset:2
Orientation:forward strand
Alignment:CGGAGACGTTCCC
--GACACGTGCC-
 G T A C A T C G A C T G C G T A A C T G T C G A G T A C A T C G A G C T A C G T A T G C A G T C G T A C
A C G T A C G T C T A G T C G A T G A C C T G A G T A C T A C G G A C T A T C G A G T C T A G C A C G T

PB0094.1_Zfp128_1/Jaspar

Match Rank:3
Score:0.55
Offset:-1
Orientation:forward strand
Alignment:-CGGAGACGTTCCC---
TCTTTGGCGTACCCTAA
 A C G T G T A C A T C G A C T G C G T A A C T G T C G A G T A C A T C G A G C T A C G T A T G C A G T C G T A C A C G T A C G T A C G T
A C G T G A T C G C A T C A G T C A G T C A T G C T A G A G T C C T A G A C G T C G T A G T A C T A G C A G T C A G C T G T C A C T G A

PB0133.1_Hic1_2/Jaspar

Match Rank:4
Score:0.54
Offset:3
Orientation:forward strand
Alignment:CGGAGACGTTCCC------
---GGGTGTGCCCAAAAGG
 G T A C A T C G A C T G C G T A A C T G T C G A G T A C A T C G A G C T A C G T A T G C A G T C G T A C A C G T A C G T A C G T A C G T A C G T A C G T
A C G T A C G T A C G T C A T G A T C G C A T G C A G T C T A G A C G T C T A G A G T C A G T C G T A C G T C A C G T A C G T A G T C A C T A G T A C G

HEY1/MA0823.1/Jaspar

Match Rank:5
Score:0.54
Offset:2
Orientation:forward strand
Alignment:CGGAGACGTTCCC
--GACACGTGCC-
 G T A C A T C G A C T G C G T A A C T G T C G A G T A C A T C G A G C T A C G T A T G C A G T C G T A C
A C G T A C G T T A C G T C G A A G T C T C G A A G T C A T C G A G C T C T A G A G T C T G A C A C G T

HIF-1a(bHLH)/MCF7-HIF1a-ChIP-Seq(GSE28352)/Homer

Match Rank:6
Score:0.54
Offset:4
Orientation:forward strand
Alignment:CGGAGACGTTCCC
----TACGTGCV-
 G T A C A T C G A C T G C G T A A C T G T C G A G T A C A T C G A G C T A C G T A T G C A G T C G T A C
A C G T A C G T A C G T A C G T A C G T C T G A G A T C A T C G G A C T T C A G G T A C T A G C A C G T

Hes2/MA0616.1/Jaspar

Match Rank:7
Score:0.54
Offset:-2
Orientation:forward strand
Alignment:--CGGAGACGTTCCC
TAACGACACGTGC--
 A C G T A C G T G T A C A T C G A C T G C G T A A C T G T C G A G T A C A T C G A G C T A C G T A T G C A G T C G T A C
A C G T C G T A C G T A T A G C A T C G C T G A G T A C C T G A G T A C C T A G A C G T C T A G G T A C A C G T A C G T

NFkB-p65-Rel(RHD)/ThioMac-LPS-Expression(GSE23622)/Homer

Match Rank:8
Score:0.54
Offset:2
Orientation:reverse strand
Alignment:CGGAGACGTTCCC
--GGGAATTTCC-
 G T A C A T C G A C T G C G T A A C T G T C G A G T A C A T C G A G C T A C G T A T G C A G T C G T A C
A C G T A C G T A C T G C T A G A C T G C T G A T C G A C G A T A G C T C G A T G T A C G T A C A C G T

HES7/MA0822.1/Jaspar

Match Rank:9
Score:0.54
Offset:1
Orientation:forward strand
Alignment:CGGAGACGTTCCC
-TGGCACGTGCCA
 G T A C A T C G A C T G C G T A A C T G T C G A G T A C A T C G A G C T A C G T A T G C A G T C G T A C
A C G T G A C T T C A G T C A G G A T C T C G A A G T C C T A G G A C T T C A G G A T C A G T C C T G A

PB0180.1_Sp4_2/Jaspar

Match Rank:10
Score:0.53
Offset:0
Orientation:forward strand
Alignment:CGGAGACGTTCCC--
CAAAGGCGTGGCCAG
 G T A C A T C G A C T G C G T A A C T G T C G A G T A C A T C G A G C T A C G T A T G C A G T C G T A C A C G T A C G T
A G T C C G T A C G T A T C G A A T C G A C T G G T A C A C T G A C G T C T A G A C T G G A T C G A T C G T C A C A T G