Information for 5-AGACAAAAGCAGT (Motif 7)

C G T A A C T G C G T A A T G C C G T A C G T A C T G A C T G A A C T G A G T C C T G A A C T G A C G T
Reverse Opposite:
C G T A A G T C A G C T A C T G A G T C A G C T A G C T A C G T A C G T A T C G A C G T A G T C A C G T
p-value:1e-10
log p-value:-2.509e+01
Information Content per bp:1.913
Number of Target Sequences with motif5.0
Percentage of Target Sequences with motif0.60%
Number of Background Sequences with motif1.8
Percentage of Background Sequences with motif0.00%
Average Position of motif in Targets51.0 +/- 25.5bp
Average Position of motif in Background64.8 +/- 18.4bp
Strand Bias (log2 ratio + to - strand density)-0.6
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

Sox3/MA0514.1/Jaspar

Match Rank:1
Score:0.67
Offset:-1
Orientation:reverse strand
Alignment:-AGACAAAAGCAGT
AAAACAAAGG----
 A C G T C G T A A C T G C G T A A T G C C G T A C G T A C T G A C T G A A C T G A G T C C T G A A C T G A C G T
T C G A T C G A T C G A C G T A A T G C C G T A C G T A C G T A C T A G T A C G A C G T A C G T A C G T A C G T

Sox3(HMG)/NPC-Sox3-ChIP-Seq(GSE33059)/Homer

Match Rank:2
Score:0.62
Offset:1
Orientation:reverse strand
Alignment:AGACAAAAGCAGT
-RACAAWGG----
 C G T A A C T G C G T A A T G C C G T A C G T A C T G A C T G A A C T G A G T C C T G A A C T G A C G T
A C G T T C G A G T C A T G A C C G T A C G T A C G T A C T A G T A C G A C G T A C G T A C G T A C G T

Sox15(HMG)/CPA-Sox15-ChIP-Seq(GSE62909)/Homer

Match Rank:3
Score:0.61
Offset:0
Orientation:forward strand
Alignment:AGACAAAAGCAGT
RAACAATGGN---
 C G T A A C T G C G T A A T G C C G T A C G T A C T G A C T G A A C T G A G T C C T G A A C T G A C G T
C T G A T C G A C G T A A T G C C G T A C G T A C G A T C T A G T C A G G A T C A C G T A C G T A C G T

PB0166.1_Sox12_2/Jaspar

Match Rank:4
Score:0.61
Offset:-4
Orientation:forward strand
Alignment:----AGACAAAAGCAGT
AAACAGACAAAGGAAT-
 A C G T A C G T A C G T A C G T C G T A A C T G C G T A A T G C C G T A C G T A C T G A C T G A A C T G A G T C C T G A A C T G A C G T
T G C A T G C A C G T A A G C T C T G A A T C G C G T A A G T C G C T A T C G A G C T A T A C G T C A G T G C A C G T A G A C T A C G T

PB0168.1_Sox14_2/Jaspar

Match Rank:5
Score:0.60
Offset:-3
Orientation:forward strand
Alignment:---AGACAAAAGCAGT
CTCACACAATGGCGC-
 A C G T A C G T A C G T C G T A A C T G C G T A A T G C C G T A C G T A C T G A C T G A A C T G A G T C C T G A A C T G A C G T
A G T C A C G T A G T C T C G A T A G C C G T A A T G C G T C A G T C A G C A T C T A G T C A G G T A C A C T G A T G C A C G T

GATA3/MA0037.2/Jaspar

Match Rank:6
Score:0.60
Offset:0
Orientation:forward strand
Alignment:AGACAAAAGCAGT
AGATAAGA-----
 C G T A A C T G C G T A A T G C C G T A C G T A C T G A C T G A A C T G A G T C C T G A A C T G A C G T
C G T A A C T G C G T A A C G T C G T A C G T A C T A G T C G A A C G T A C G T A C G T A C G T A C G T

Sox6/MA0515.1/Jaspar

Match Rank:7
Score:0.59
Offset:-1
Orientation:reverse strand
Alignment:-AGACAAAAGCAGT
AAAACAATGG----
 A C G T C G T A A C T G C G T A A T G C C G T A C G T A C T G A C T G A A C T G A G T C C T G A A C T G A C G T
T C G A C T G A T C G A C G T A A G T C C G T A C G T A C G A T C T A G T C A G A C G T A C G T A C G T A C G T

Tcf21/MA0832.1/Jaspar

Match Rank:8
Score:0.59
Offset:2
Orientation:reverse strand
Alignment:AGACAAAAGCAGT---
--NCAACAGCTGTTGC
 C G T A A C T G C G T A A T G C C G T A C G T A C T G A C T G A A C T G A G T C C T G A A C T G A C G T A C G T A C G T A C G T
A C G T A C G T T C G A A G T C C T G A T G C A A G T C C G T A T A C G G T A C A C G T A C T G A C G T G A C T C T A G A G T C

Sox2/MA0143.3/Jaspar

Match Rank:9
Score:0.58
Offset:1
Orientation:reverse strand
Alignment:AGACAAAAGCAGT
-AACAAAGG----
 C G T A A C T G C G T A A T G C C G T A C G T A C T G A C T G A A C T G A G T C C T G A A C T G A C G T
A C G T T C G A C G T A A G T C C G T A C G T A C G T A A C T G A C T G A C G T A C G T A C G T A C G T

Smad3(MAD)/NPC-Smad3-ChIP-Seq(GSE36673)/Homer

Match Rank:10
Score:0.56
Offset:-2
Orientation:reverse strand
Alignment:--AGACAAAAGCAGT
BCAGACWA-------
 A C G T A C G T C G T A A C T G C G T A A T G C C G T A C G T A C T G A C T G A A C T G A G T C C T G A A C T G A C G T
A T G C A G T C C G T A C T A G G T C A A G T C C G T A T C G A A C G T A C G T A C G T A C G T A C G T A C G T A C G T