Information for 3-GAGAAGCTGCTGC (Motif 5)

A C T G C G T A C T A G C T G A T C G A A C T G A G T C A C G T A C T G A T G C A C G T A C T G A T G C
Reverse Opposite:
A T C G A G T C C G T A A T C G A G T C C G T A A C T G A G T C A C G T A G C T A G T C A C G T A G T C
p-value:1e-11
log p-value:-2.564e+01
Information Content per bp:1.897
Number of Target Sequences with motif8.0
Percentage of Target Sequences with motif0.96%
Number of Background Sequences with motif9.9
Percentage of Background Sequences with motif0.02%
Average Position of motif in Targets39.6 +/- 20.3bp
Average Position of motif in Background51.5 +/- 28.1bp
Strand Bias (log2 ratio + to - strand density)0.7
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

PRDM9(Zf)/Testis-DMC1-ChIP-Seq(GSE35498)/Homer

Match Rank:1
Score:0.74
Offset:1
Orientation:reverse strand
Alignment:GAGAAGCTGCTGC---
-AGATGCTRCTRCCHT
 A C T G C G T A C T A G C T G A T C G A A C T G A G T C A C G T A C T G A T G C A C G T A C T G A T G C A C G T A C G T A C G T
A C G T C G T A T C A G T G C A C G A T C T A G T G A C G A C T C T A G A G T C G A C T C T A G A G T C G A T C G C T A G A C T

Ascl2/MA0816.1/Jaspar

Match Rank:2
Score:0.67
Offset:1
Orientation:forward strand
Alignment:GAGAAGCTGCTGC
-AGCAGCTGCT--
 A C T G C G T A C T A G C T G A T C G A A C T G A G T C A C G T A C T G A T G C A C G T A C T G A T G C
A C G T T C G A T C A G G T A C C G T A A T C G T G A C C G A T A C T G A G T C G A C T A C G T A C G T

PB0003.1_Ascl2_1/Jaspar

Match Rank:3
Score:0.66
Offset:-3
Orientation:reverse strand
Alignment:---GAGAAGCTGCTGC-
NNNNAGCAGCTGCTGAN
 A C G T A C G T A C G T A C T G C G T A C T A G C T G A T C G A A C T G A G T C A C G T A C T G A T G C A C G T A C T G A T G C A C G T
G T A C C G T A C T A G A C G T T C G A T C A G A G T C C G T A A T C G T A G C C G A T A C T G A G T C A G C T T C A G T G C A T C A G

MyoD(bHLH)/Myotube-MyoD-ChIP-Seq(GSE21614)/Homer

Match Rank:4
Score:0.66
Offset:1
Orientation:forward strand
Alignment:GAGAAGCTGCTGC
-AGCAGCTGCTNN
 A C T G C G T A C T A G C T G A T C G A A C T G A G T C A C G T A C T G A T G C A C G T A C T G A T G C
A C G T C T G A T C A G A G T C C G T A A T C G A T G C C G A T A C T G A G T C G A C T A T C G A G T C

NHLH1/MA0048.2/Jaspar

Match Rank:5
Score:0.63
Offset:4
Orientation:reverse strand
Alignment:GAGAAGCTGCTGC-
----CGCAGCTGCG
 A C T G C G T A C T A G C T G A T C G A A C T G A G T C A C G T A C T G A T G C A C G T A C T G A T G C A C G T
A C G T A C G T A C G T A C G T T G A C C T A G A T G C T C G A A T C G T A G C A C G T A C T G A G T C A C T G

Tcf12(bHLH)/GM12878-Tcf12-ChIP-Seq(GSE32465)/Homer

Match Rank:6
Score:0.62
Offset:3
Orientation:reverse strand
Alignment:GAGAAGCTGCTGC
---CAGCAGCTGN
 A C T G C G T A C T A G C T G A T C G A A C T G A G T C A C G T A C T G A T G C A C G T A C T G A T G C
A C G T A C G T A C G T T G A C T C G A T C A G A G T C C G T A A T C G A T G C A C G T A C T G A G C T

SCL(bHLH)/HPC7-Scl-ChIP-Seq(GSE13511)/Homer

Match Rank:7
Score:0.62
Offset:4
Orientation:forward strand
Alignment:GAGAAGCTGCTGC
----ANCAGCTG-
 A C T G C G T A C T A G C T G A T C G A A C T G A G T C A C G T A C T G A T G C A C G T A C T G A T G C
A C G T A C G T A C G T A C G T C T G A T C A G G T A C G C T A A C T G T G A C G C A T C A T G A C G T

Myod1/MA0499.1/Jaspar

Match Rank:8
Score:0.62
Offset:1
Orientation:reverse strand
Alignment:GAGAAGCTGCTGC-
-NGNGACAGCTGCN
 A C T G C G T A C T A G C T G A T C G A A C T G A G T C A C G T A C T G A T G C A C G T A C T G A T G C A C G T
A C G T T C G A T C A G A T C G T C A G T C G A A G T C C G T A A C T G T A G C C G A T A C T G A T G C C G T A

Myog/MA0500.1/Jaspar

Match Rank:9
Score:0.59
Offset:1
Orientation:forward strand
Alignment:GAGAAGCTGCTGC
-GACAGCTGCAG-
 A C T G C G T A C T A G C T G A T C G A A C T G A G T C A C G T A C T G A T G C A C G T A C T G A T G C
A C G T T C A G T C G A A G T C C G T A A C T G T A G C A C G T A C T G T A G C C T G A T A C G A C G T

Tcf12/MA0521.1/Jaspar

Match Rank:10
Score:0.59
Offset:1
Orientation:forward strand
Alignment:GAGAAGCTGCTGC
-AACAGCTGCAG-
 A C T G C G T A C T A G C T G A T C G A A C T G A G T C A C G T A C T G A T G C A C G T A C T G A T G C
A C G T T C G A T C G A A G T C C G T A C T A G T A G C A C G T A C T G T A G C C G T A T A C G A C G T