Information for 2-GGGCCATCGG (Motif 4)

C A T G A T C G A T C G T G A C A T G C G T C A A C G T A T G C T A C G A C T G
Reverse Opposite:
T G A C A T G C T A C G T G C A C A G T T A C G A C T G T A G C T A G C G T A C
p-value:1e-11
log p-value:-2.697e+01
Information Content per bp:1.650
Number of Target Sequences with motif106.0
Percentage of Target Sequences with motif12.69%
Number of Background Sequences with motif2949.5
Percentage of Background Sequences with motif6.13%
Average Position of motif in Targets50.8 +/- 26.5bp
Average Position of motif in Background50.2 +/- 28.7bp
Strand Bias (log2 ratio + to - strand density)-0.1
Multiplicity (# of sites on avg that occur together)1.08
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

NeuroD1(bHLH)/Islet-NeuroD1-ChIP-Seq(GSE30298)/Homer

Match Rank:1
Score:0.67
Offset:2
Orientation:forward strand
Alignment:GGGCCATCGG--
--GCCATCTGTT
 C A T G A T C G A T C G T G A C A T G C G T C A A C G T A T G C T A C G A C T G A C G T A C G T
A C G T A C G T T C A G T G A C G T A C C G T A A C G T T G A C A C G T T C A G A G C T G A C T

PB0193.1_Tcfe2a_2/Jaspar

Match Rank:2
Score:0.65
Offset:-2
Orientation:reverse strand
Alignment:--GGGCCATCGG-----
CCNNACCATCTGGCCTN
 A C G T A C G T C A T G A T C G A T C G T G A C A T G C G T C A A C G T A T G C T A C G A C T G A C G T A C G T A C G T A C G T A C G T
A G T C T A G C T A C G C T A G T C G A G T A C A G T C C G T A A G C T T G A C A G C T C A T G A T C G G T A C G A T C A G C T C A G T

NeuroG2(bHLH)/Fibroblast-NeuroG2-ChIP-Seq(GSE75910)/Homer

Match Rank:3
Score:0.62
Offset:2
Orientation:forward strand
Alignment:GGGCCATCGG--
--ACCATCTGTT
 C A T G A T C G A T C G T G A C A T G C G T C A A C G T A T G C T A C G A C T G A C G T A C G T
A C G T A C G T T C G A T G A C G T A C C G T A C A G T T G A C A C G T A C T G A G C T A G C T

PLAG1/MA0163.1/Jaspar

Match Rank:4
Score:0.61
Offset:-1
Orientation:forward strand
Alignment:-GGGCCATCGG---
GGGGCCCAAGGGGG
 A C G T C A T G A T C G A T C G T G A C A T G C G T C A A C G T A T G C T A C G A C T G A C G T A C G T A C G T
A C T G C T A G A C T G A C T G A T G C A G T C G T A C C G T A T G C A C A T G A C T G A C T G A C T G C T A G

Nanog(Homeobox)/mES-Nanog-ChIP-Seq(GSE11724)/Homer

Match Rank:5
Score:0.56
Offset:1
Orientation:forward strand
Alignment:GGGCCATCGG-
-GGCCATTAAC
 C A T G A T C G A T C G T G A C A T G C G T C A A C G T A T G C T A C G A C T G A C G T
A C G T C T A G T A C G G A T C G T A C G C T A A G C T A G C T G T C A T C G A T A G C

NFIX/MA0671.1/Jaspar

Match Rank:6
Score:0.55
Offset:-1
Orientation:forward strand
Alignment:-GGGCCATCGG
CGTGCCAAG--
 A C G T C A T G A T C G A T C G T G A C A T G C G T C A A C G T A T G C T A C G A C T G
T A G C C A T G G C A T A C T G A T G C A G T C T G C A C T G A T A C G A C G T A C G T

Hic1/MA0739.1/Jaspar

Match Rank:7
Score:0.55
Offset:0
Orientation:forward strand
Alignment:GGGCCATCGG
ATGCCAACC-
 C A T G A T C G A T C G T G A C A T G C G T C A A C G T A T G C T A C G A C T G
T C G A A G C T T C A G T A G C G T A C G T C A T C G A A T G C A G T C A C G T

Olig2(bHLH)/Neuron-Olig2-ChIP-Seq(GSE30882)/Homer

Match Rank:8
Score:0.55
Offset:2
Orientation:forward strand
Alignment:GGGCCATCGG--
--RCCATMTGTT
 C A T G A T C G A T C G T G A C A T G C G T C A A C G T A T G C T A C G A C T G A C G T A C G T
A C G T A C G T C T G A T G A C T G A C C G T A A C G T T G A C A G C T C T A G A C G T G A C T

Atoh1(bHLH)/Cerebellum-Atoh1-ChIP-Seq(GSE22111)/Homer

Match Rank:9
Score:0.55
Offset:2
Orientation:reverse strand
Alignment:GGGCCATCGG----
--GCCAGCTGBTNB
 C A T G A T C G A T C G T G A C A T G C G T C A A C G T A T G C T A C G A C T G A C G T A C G T A C G T A C G T
A C G T A C G T T C A G T A G C A G T C C G T A A C T G G T A C A C G T A C T G A T C G A G C T T G C A A G T C

NFIC/MA0161.1/Jaspar

Match Rank:10
Score:0.54
Offset:1
Orientation:reverse strand
Alignment:GGGCCATCGG
-TGCCAA---
 C A T G A T C G A T C G T G A C A T G C G T C A A C G T A T G C T A C G A C T G
A C G T G C A T C A T G G A T C A G T C G T C A C T G A A C G T A C G T A C G T