Information for 21-AACAGRAGGTCAG (Motif 23)

C T G A C G T A A G T C C G T A A C T G C T G A C G T A A C T G A C T G C G A T A G T C C G T A C T A G
Reverse Opposite:
A G T C A C G T T A C G C G T A A G T C A G T C A C G T A G C T T G A C A C G T A C T G C G A T A G C T
p-value:1e-7
log p-value:-1.806e+01
Information Content per bp:1.835
Number of Target Sequences with motif6.0
Percentage of Target Sequences with motif0.76%
Number of Background Sequences with motif5.1
Percentage of Background Sequences with motif0.02%
Average Position of motif in Targets34.2 +/- 17.2bp
Average Position of motif in Background49.8 +/- 15.6bp
Strand Bias (log2 ratio + to - strand density)1.0
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

THRb(NR)/Liver-NR1A2-ChIP-Seq(GSE52613)/Homer

Match Rank:1
Score:0.66
Offset:4
Orientation:forward strand
Alignment:AACAGRAGGTCAG
----TRAGGTCA-
 C T G A C G T A A G T C C G T A A C T G C T G A C G T A A C T G A C T G C G A T A G T C C G T A C T A G
A C G T A C G T A C G T A C G T G C A T T C A G C T G A A T C G A C T G C G A T G A T C C T G A A C G T

NR4A2/MA0160.1/Jaspar

Match Rank:2
Score:0.65
Offset:5
Orientation:forward strand
Alignment:AACAGRAGGTCAG
-----AAGGTCAC
 C T G A C G T A A G T C C G T A A C T G C T G A C G T A A C T G A C T G C G A T A G T C C G T A C T A G
A C G T A C G T A C G T A C G T A C G T C T G A C T G A A C T G C T A G G A C T A G T C C G T A T G A C

SD0001.1_at_AC_acceptor/Jaspar

Match Rank:3
Score:0.64
Offset:5
Orientation:forward strand
Alignment:AACAGRAGGTCAG---
-----CAGGTAAGTAT
 C T G A C G T A A G T C C G T A A C T G C T G A C G T A A C T G A C T G C G A T A G T C C G T A C T A G A C G T A C G T A C G T
A C G T A C G T A C G T A C G T A C G T T G A C C G T A C T A G A C T G A C G T C T G A C G T A C T A G C G A T C T G A G A C T

Olig2(bHLH)/Neuron-Olig2-ChIP-Seq(GSE30882)/Homer

Match Rank:4
Score:0.64
Offset:0
Orientation:reverse strand
Alignment:AACAGRAGGTCAG
AACAKATGGY---
 C T G A C G T A A G T C C G T A A C T G C T G A C G T A A C T G A C T G C G A T A G T C C G T A C T A G
C T G A T G C A A G T C T C G A A C T G T G C A G C A T A C T G A C T G G A C T A C G T A C G T A C G T

Ets1-distal(ETS)/CD4+-PolII-ChIP-Seq(Barski_et_al.)/Homer

Match Rank:5
Score:0.64
Offset:0
Orientation:forward strand
Alignment:AACAGRAGGTCAG
AACAGGAAGT---
 C T G A C G T A A G T C C G T A A C T G C T G A C G T A A C T G A C T G C G A T A G T C C G T A C T A G
T G C A C T G A A T G C G T C A A C T G A C T G C G T A C G T A C T A G A G C T A C G T A C G T A C G T

NeuroG2(bHLH)/Fibroblast-NeuroG2-ChIP-Seq(GSE75910)/Homer

Match Rank:6
Score:0.64
Offset:0
Orientation:reverse strand
Alignment:AACAGRAGGTCAG
AACAGATGGT---
 C T G A C G T A A G T C C G T A A C T G C T G A C G T A A C T G A C T G C G A T A G T C C G T A C T A G
T C G A T C G A A G T C C G T A A C T G G T C A G C A T A C T G A C T G A G C T A C G T A C G T A C G T

COUP-TFII(NR)/Artia-Nr2f2-ChIP-Seq(GSE46497)/Homer

Match Rank:7
Score:0.63
Offset:4
Orientation:forward strand
Alignment:AACAGRAGGTCAG
----AGRGGTCA-
 C T G A C G T A A G T C C G T A A C T G C T G A C G T A A C T G A C T G C G A T A G T C C G T A C T A G
A C G T A C G T A C G T A C G T T C G A T C A G T C G A A C T G C A T G A C G T A G T C C T G A A C G T

MF0004.1_Nuclear_Receptor_class/Jaspar

Match Rank:8
Score:0.63
Offset:6
Orientation:forward strand
Alignment:AACAGRAGGTCAG
------AGGTCA-
 C T G A C G T A A G T C C G T A A C T G C T G A C G T A A C T G A C T G C G A T A G T C C G T A C T A G
A C G T A C G T A C G T A C G T A C G T A C G T C T G A C A T G C A T G C G A T G T A C T G C A A C G T

TAL1::TCF3/MA0091.1/Jaspar

Match Rank:9
Score:0.62
Offset:0
Orientation:reverse strand
Alignment:AACAGRAGGTCAG
AACAGATGGTCN-
 C T G A C G T A A G T C C G T A A C T G C T G A C G T A A C T G A C T G C G A T A G T C C G T A C T A G
C G T A T G C A G T A C C G T A A C T G T G C A A C G T A T C G A C T G G A C T A T G C C A T G A C G T

Nr2f6(var.2)/MA0728.1/Jaspar

Match Rank:10
Score:0.61
Offset:-3
Orientation:forward strand
Alignment:---AACAGRAGGTCAG
GAGGTCAAAAGGTCA-
 A C G T A C G T A C G T C T G A C G T A A G T C C G T A A C T G C T G A C G T A A C T G A C T G C G A T A G T C C G T A C T A G
T C A G C T G A A C T G C T A G A C G T A G T C G T C A C G T A C T G A C G T A A C T G A C T G C G A T A G T C C T G A A C G T