Information for 11-CTACTGCATATGC (Motif 11)

A G T C C G A T C G T A A G T C A C G T C T A G A G T C C G T A A C G T G T C A A C G T C T A G A G T C
Reverse Opposite:
C T A G A G T C G T C A A C G T T C G A A C G T A C T G A G T C C G T A A C T G G A C T C G T A C T A G
p-value:1e-11
log p-value:-2.761e+01
Information Content per bp:1.803
Number of Target Sequences with motif6.0
Percentage of Target Sequences with motif0.76%
Number of Background Sequences with motif0.0
Percentage of Background Sequences with motif0.00%
Average Position of motif in Targets70.3 +/- 17.4bp
Average Position of motif in Background0.0 +/- 0.0bp
Strand Bias (log2 ratio + to - strand density)1.0
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

Pit1(Homeobox)/GCrat-Pit1-ChIP-Seq(GSE58009)/Homer

Match Rank:1
Score:0.68
Offset:3
Orientation:forward strand
Alignment:CTACTGCATATGC
---ATGMATATDC
 A G T C C G A T C G T A A G T C A C G T C T A G A G T C C G T A A C G T G T C A A C G T C T A G A G T C
A C G T A C G T A C G T G C T A A C G T C T A G G T A C G C T A G A C T C T G A G C A T C A T G G A T C

Bhlha15/MA0607.1/Jaspar

Match Rank:2
Score:0.67
Offset:5
Orientation:forward strand
Alignment:CTACTGCATATGC
-----CCATATGT
 A G T C C G A T C G T A A G T C A C G T C T A G A G T C C G T A A C G T G T C A A C G T C T A G A G T C
A C G T A C G T A C G T A C G T A C G T T A G C A G T C C G T A A C G T G T C A A C G T A C T G A G C T

Atoh1/MA0461.2/Jaspar

Match Rank:3
Score:0.61
Offset:4
Orientation:reverse strand
Alignment:CTACTGCATATGC-
----ANCATATGTT
 A G T C C G A T C G T A A G T C A C G T C T A G A G T C C G T A A C G T G T C A A C G T C T A G A G T C A C G T
A C G T A C G T A C G T A C G T C T G A T G C A G T A C G C T A A C G T G T C A A G C T A C T G A C G T A G C T

BHLHE22/MA0818.1/Jaspar

Match Rank:4
Score:0.60
Offset:4
Orientation:reverse strand
Alignment:CTACTGCATATGC-
----ANCATATGGT
 A G T C C G A T C G T A A G T C A C G T C T A G A G T C C G T A A C G T G T C A A C G T C T A G A G T C A C G T
A C G T A C G T A C G T A C G T C T G A T C G A T G A C C T G A A C G T C T G A G A C T A C T G A C T G A G C T

PB0091.1_Zbtb3_1/Jaspar

Match Rank:5
Score:0.59
Offset:-4
Orientation:forward strand
Alignment:----CTACTGCATATGC
AATCGCACTGCATTCCG
 A C G T A C G T A C G T A C G T A G T C C G A T C G T A A G T C A C G T C T A G A G T C C G T A A C G T G T C A A C G T C T A G A G T C
C T G A C T G A A C G T A T G C A T C G G T A C C T G A A T G C C G A T A C T G A T G C G T C A A G C T A C G T A T G C A T G C A C T G

Twist2/MA0633.1/Jaspar

Match Rank:6
Score:0.59
Offset:4
Orientation:forward strand
Alignment:CTACTGCATATGC-
----ACCATATGTT
 A G T C C G A T C G T A A G T C A C G T C T A G A G T C C G T A A C G T G T C A A C G T C T A G A G T C A C G T
A C G T A C G T A C G T A C G T C T G A G T A C A G T C C G T A A G C T C T G A A C G T A C T G A C G T A C G T

PB0003.1_Ascl2_1/Jaspar

Match Rank:7
Score:0.59
Offset:1
Orientation:forward strand
Alignment:CTACTGCATATGC-----
-CTCAGCAGCTGCTACTG
 A G T C C G A T C G T A A G T C A C G T C T A G A G T C C G T A A C G T G T C A A C G T C T A G A G T C A C G T A C G T A C G T A C G T A C G T
A C G T A G T C A C G T A G T C T C G A T C A G A G T C C G T A A T C G T A G C C G A T A C T G A G T C A G C T T G A C G A T C G C A T C A T G

OCT:OCT(POU,Homeobox)/NPC-Brn1-ChIP-Seq(GSE35496)/Homer

Match Rank:8
Score:0.58
Offset:0
Orientation:reverse strand
Alignment:CTACTGCATATGC--
CTCATGAATATTCAT
 A G T C C G A T C G T A A G T C A C G T C T A G A G T C C G T A A C G T G T C A A C G T C T A G A G T C A C G T A C G T
T A G C G A C T G A T C C G T A A C G T T C A G G T C A C G T A A C G T C G T A C G A T A C G T A G T C C G T A C G A T

Ascl1(bHLH)/NeuralTubes-Ascl1-ChIP-Seq(GSE55840)/Homer

Match Rank:9
Score:0.58
Offset:4
Orientation:reverse strand
Alignment:CTACTGCATATGC---
----NVCAGCTGBBNN
 A G T C C G A T C G T A A G T C A C G T C T A G A G T C C G T A A C G T G T C A A C G T C T A G A G T C A C G T A C G T A C G T
A C G T A C G T A C G T A C G T T C G A T A C G G T A C C G T A A T C G T G A C C G A T A C T G A T G C A T G C T C A G G A T C

NEUROD2/MA0668.1/Jaspar

Match Rank:10
Score:0.58
Offset:4
Orientation:reverse strand
Alignment:CTACTGCATATGC-
----ACCATATGGC
 A G T C C G A T C G T A A G T C A C G T C T A G A G T C C G T A A C G T G T C A A C G T C T A G A G T C A C G T
A C G T A C G T A C G T A C G T C T G A T G A C G T A C C T G A A C G T C T G A G A C T A T C G A C T G A G T C