Information for 17-AGGTGCCAGGGHG (Motif 29)

G T C A A C T G C T A G A C G T A C T G A G T C A G T C C G T A C T A G A C T G A C T G G A C T C T A G
Reverse Opposite:
A G T C C G T A A G T C A G T C A G T C A C G T A C T G A C T G A G T C C G T A A G T C G T A C A C G T
p-value:1e-7
log p-value:-1.775e+01
Information Content per bp:1.844
Number of Target Sequences with motif7.0
Percentage of Target Sequences with motif0.95%
Number of Background Sequences with motif18.8
Percentage of Background Sequences with motif0.04%
Average Position of motif in Targets43.1 +/- 22.7bp
Average Position of motif in Background39.4 +/- 21.6bp
Strand Bias (log2 ratio + to - strand density)-1.3
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

Rfx1/MA0509.1/Jaspar

Match Rank:1
Score:0.73
Offset:1
Orientation:reverse strand
Alignment:AGGTGCCAGGGHG--
-GTTGCCATGGNAAC
 G T C A A C T G C T A G A C G T A C T G A G T C A G T C C G T A C T A G A C T G A C T G G A C T C T A G A C G T A C G T
A C G T A C T G A G C T G A C T C A T G A G T C A G T C C G T A C G A T C T A G T C A G T G A C C T G A T G C A G A T C

NFIX/MA0671.1/Jaspar

Match Rank:2
Score:0.71
Offset:1
Orientation:forward strand
Alignment:AGGTGCCAGGGHG
-CGTGCCAAG---
 G T C A A C T G C T A G A C G T A C T G A G T C A G T C C G T A C T A G A C T G A C T G G A C T C T A G
A C G T T A G C C A T G G C A T A C T G A T G C A G T C T G C A C T G A T A C G A C G T A C G T A C G T

NF1-halfsite(CTF)/LNCaP-NF1-ChIP-Seq(Unpublished)/Homer

Match Rank:3
Score:0.71
Offset:2
Orientation:forward strand
Alignment:AGGTGCCAGGGHG
--TTGCCAAG---
 G T C A A C T G C T A G A C G T A C T G A G T C A G T C C G T A C T A G A C T G A C T G G A C T C T A G
A C G T A C G T A G C T A C G T A C T G A T G C A G T C C G T A C T G A T A C G A C G T A C G T A C G T

Rfx1(HTH)/NPC-H3K4me1-ChIP-Seq(GSE16256)/Homer

Match Rank:4
Score:0.69
Offset:0
Orientation:forward strand
Alignment:AGGTGCCAGGGHG-
NGTTGCCATGGCAA
 G T C A A C T G C T A G A C G T A C T G A G T C A G T C C G T A C T A G A C T G A C T G G A C T C T A G A C G T
A C T G T C A G A G C T G A C T C A T G A G T C A G T C G C T A C G A T C T A G T C A G G T A C C T G A T C G A

NFIC/MA0161.1/Jaspar

Match Rank:5
Score:0.68
Offset:3
Orientation:reverse strand
Alignment:AGGTGCCAGGGHG
---TGCCAA----
 G T C A A C T G C T A G A C G T A C T G A G T C A G T C C G T A C T A G A C T G A C T G G A C T C T A G
A C G T A C G T A C G T G C A T C A T G G A T C A G T C G T C A C T G A A C G T A C G T A C G T A C G T

NFIA/MA0670.1/Jaspar

Match Rank:6
Score:0.68
Offset:1
Orientation:forward strand
Alignment:AGGTGCCAGGGHG
-GGTGCCAAGT--
 G T C A A C T G C T A G A C G T A C T G A G T C A G T C C G T A C T A G A C T G A C T G G A C T C T A G
A C G T T C A G C A T G A C G T A C T G A G T C A G T C C G T A C G T A T C A G C G A T A C G T A C G T

Tbx5(T-box)/HL1-Tbx5.biotin-ChIP-Seq(GSE21529)/Homer

Match Rank:7
Score:0.67
Offset:0
Orientation:forward strand
Alignment:AGGTGCCAGGGHG
AGGTGTCA-----
 G T C A A C T G C T A G A C G T A C T G A G T C A G T C C G T A C T A G A C T G A C T G G A C T C T A G
C T G A C T A G A T C G A G C T A C T G G A C T A G T C C T G A A C G T A C G T A C G T A C G T A C G T

PB0055.1_Rfx4_1/Jaspar

Match Rank:8
Score:0.67
Offset:-2
Orientation:reverse strand
Alignment:--AGGTGCCAGGGHG
NNCGTTGCTATGGNN
 A C G T A C G T G T C A A C T G C T A G A C G T A C T G A G T C A G T C C G T A C T A G A C T G A C T G G A C T C T A G
G C T A A G T C A T G C C T A G A G C T G A C T C T A G A G T C A G C T C T G A C A G T T A C G A T C G C A G T T C G A

Rfx5(HTH)/GM12878-Rfx5-ChIP-Seq(GSE31477)/Homer

Match Rank:9
Score:0.66
Offset:-1
Orientation:reverse strand
Alignment:-AGGTGCCAGGGHG
CTGTTGCTAGGS--
 A C G T G T C A A C T G C T A G A C G T A C T G A G T C A G T C C G T A C T A G A C T G A C T G G A C T C T A G
A G T C C G A T A C T G A C G T G A C T C T A G A G T C A G C T C T G A C A T G C T A G T A C G A C G T A C G T

X-box(HTH)/NPC-H3K4me1-ChIP-Seq(GSE16256)/Homer

Match Rank:10
Score:0.65
Offset:0
Orientation:forward strand
Alignment:AGGTGCCAGGGHG-
GGTTGCCATGGCAA
 G T C A A C T G C T A G A C G T A C T G A G T C A G T C C G T A C T A G A C T G A C T G G A C T C T A G A C G T
C A T G C T A G A G C T G A C T C A T G A G T C G A T C G C T A C G A T C T A G T C A G G T A C C T G A T C G A