Information for 2-CCATAGCAAC (Motif 3)

A G T C A G T C C G T A A C G T C T G A A C T G A T G C C G T A C G T A A G T C
Reverse Opposite:
A C T G A C G T G C A T T A C G A G T C A G C T G T C A A C G T A C T G T C A G
p-value:1e-19
log p-value:-4.458e+01
Information Content per bp:1.837
Number of Target Sequences with motif26.0
Percentage of Target Sequences with motif2.97%
Number of Background Sequences with motif108.8
Percentage of Background Sequences with motif0.24%
Average Position of motif in Targets48.3 +/- 29.2bp
Average Position of motif in Background50.9 +/- 32.7bp
Strand Bias (log2 ratio + to - strand density)0.3
Multiplicity (# of sites on avg that occur together)1.04
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

PB0055.1_Rfx4_1/Jaspar

Match Rank:1
Score:0.92
Offset:-2
Orientation:forward strand
Alignment:--CCATAGCAAC---
TACCATAGCAACGGT
 A C G T A C G T A G T C A G T C C G T A A C G T C T G A A C T G A T G C C G T A C G T A A G T C A C G T A C G T A C G T
A G C T G T C A T A G C A T G C G T C A A G C T T C G A C T A G G A T C C T G A C T G A A G T C T A C G T C A G C G A T

PB0056.1_Rfxdc2_1/Jaspar

Match Rank:2
Score:0.89
Offset:-2
Orientation:forward strand
Alignment:--CCATAGCAAC---
CCGCATAGCAACGGA
 A C G T A C G T A G T C A G T C C G T A A C G T C T G A A C T G A T G C C G T A C G T A A G T C A C G T A C G T A C G T
A G T C A G T C T A C G A T G C G C T A G A C T T C G A C T A G G A T C C T G A T C G A A G T C T A C G T C A G C T G A

Rfx5(HTH)/GM12878-Rfx5-ChIP-Seq(GSE31477)/Homer

Match Rank:3
Score:0.88
Offset:0
Orientation:forward strand
Alignment:CCATAGCAAC--
SCCTAGCAACAG
 A G T C A G T C C G T A A C G T C T G A A C T G A T G C C G T A C G T A A G T C A C G T A C G T
A T G C A G T C G T A C A G C T T C G A C T A G G A T C C T G A G T C A A G T C G C T A T C A G

PB0054.1_Rfx3_1/Jaspar

Match Rank:4
Score:0.88
Offset:-6
Orientation:forward strand
Alignment:------CCATAGCAAC-------
TGTGACCCTTAGCAACCGATTAA
 A C G T A C G T A C G T A C G T A C G T A C G T A G T C A G T C C G T A A C G T C T G A A C T G A T G C C G T A C G T A A G T C A C G T A C G T A C G T A C G T A C G T A C G T A C G T
G A C T C A T G A G C T A T C G G T C A G A T C T G A C A T G C G A C T A G C T T C G A C T A G G A T C C T G A C G T A A G T C T A G C T C A G C G T A G C A T G C A T G C T A G C T A

Rfx1/MA0509.1/Jaspar

Match Rank:5
Score:0.84
Offset:-4
Orientation:forward strand
Alignment:----CCATAGCAAC
GTTGCCATGGCAAC
 A C G T A C G T A C G T A C G T A G T C A G T C C G T A A C G T C T G A A C T G A T G C C G T A C G T A A G T C
C T A G A C G T G A C T A C T G A G T C A G T C G C T A G C A T C T A G C T A G G T A C C T G A C T G A A G T C

Rfx1(HTH)/NPC-H3K4me1-ChIP-Seq(GSE16256)/Homer

Match Rank:6
Score:0.80
Offset:-3
Orientation:reverse strand
Alignment:---CCATAGCAAC-
TTGCCATGGCAACN
 A C G T A C G T A C G T A G T C A G T C C G T A A C G T C T G A A C T G A T G C C G T A C G T A A G T C A C G T
A G C T G A C T C A T G A G T C A G T C G C T A C G A T C T A G T C A G G T A C C T G A T C G A A G T C T G A C

X-box(HTH)/NPC-H3K4me1-ChIP-Seq(GSE16256)/Homer

Match Rank:7
Score:0.79
Offset:-3
Orientation:reverse strand
Alignment:---CCATAGCAAC-
TTGCCATGGCAACC
 A C G T A C G T A C G T A G T C A G T C C G T A A C G T C T G A A C T G A T G C C G T A C G T A A G T C A C G T
A G C T G A C T C A T G A G T C G A T C G C T A C G A T C T A G T C A G G T A C C T G A T C G A G A T C G T A C

RFX2/MA0600.2/Jaspar

Match Rank:8
Score:0.76
Offset:-5
Orientation:reverse strand
Alignment:-----CCATAGCAAC-
CGTTGCCATGGCAACG
 A C G T A C G T A C G T A C G T A C G T A G T C A G T C C G T A A C G T C T G A A C T G A T G C C G T A C G T A A G T C A C G T
A T G C C T A G G A C T G C A T C T A G A G T C A G T C C G T A G C A T T C A G T C A G G A T C C G T A C T G A A G T C T A C G

RFX3/MA0798.1/Jaspar

Match Rank:9
Score:0.76
Offset:-5
Orientation:forward strand
Alignment:-----CCATAGCAAC-
CGTTGCCATGGCAACG
 A C G T A C G T A C G T A C G T A C G T A G T C A G T C C G T A A C G T C T G A A C T G A T G C C G T A C G T A A G T C A C G T
A T G C C T A G G A C T G C A T C T A G A G T C A G T C C G T A G C A T T C A G T C A G G A T C C G T A T C G A G A T C T A C G

RFX5/MA0510.2/Jaspar

Match Rank:10
Score:0.75
Offset:-5
Orientation:reverse strand
Alignment:-----CCATAGCAAC-
NGTTGCCATGGCAACG
 A C G T A C G T A C G T A C G T A C G T A G T C A G T C C G T A A C G T C T G A A C T G A T G C C G T A C G T A A G T C A C G T
A T G C C T A G A C G T G A C T C T A G A G T C A G T C C G T A G C A T T C A G T C A G G A T C C T G A T C G A G A T C T A C G