Information for 2-ATGMATATTCATG (Motif 2)

G T C A A C G T A C T G G T C A C G T A A G C T C G T A C A G T C A G T A G T C T G C A A G C T C T A G
Reverse Opposite:
G A T C T C G A A C G T T A C G G T C A G T C A A C G T C T G A G C A T C A G T T G A C C G T A C A G T
p-value:1e-27
log p-value:-6.302e+01
Information Content per bp:1.589
Number of Target Sequences with motif16.0
Percentage of Target Sequences with motif1.83%
Number of Background Sequences with motif7.6
Percentage of Background Sequences with motif0.02%
Average Position of motif in Targets52.9 +/- 17.9bp
Average Position of motif in Background30.9 +/- 29.9bp
Strand Bias (log2 ratio + to - strand density)0.0
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

OCT:OCT(POU,Homeobox)/NPC-Brn1-ChIP-Seq(GSE35496)/Homer

Match Rank:1
Score:0.91
Offset:0
Orientation:forward strand
Alignment:ATGMATATTCATG--
ATGAATATTCATGAG
 G T C A A C G T A C T G G T C A C G T A A G C T C G T A C A G T C A G T A G T C T G C A A G C T C T A G A C G T A C G T
G C T A A C G T C T A G G T C A C G T A A C G T C G T A C G A T C A G T A G T C C G T A A C G T C T A G C T G A A T C G

Brn2(POU,Homeobox)/NPC-Brn2-ChIP-Seq(GSE35496)/Homer

Match Rank:2
Score:0.85
Offset:0
Orientation:forward strand
Alignment:ATGMATATTCATG
ATGAATATTC---
 G T C A A C G T A C T G G T C A C G T A A G C T C G T A C A G T C A G T A G T C T G C A A G C T C T A G
G C T A A G C T T A C G G T C A C T G A C G A T C T G A G C A T C A G T A G T C A C G T A C G T A C G T

OCT:OCT(POU,Homeobox)/NPC-OCT6-ChIP-Seq(GSE43916)/Homer

Match Rank:3
Score:0.84
Offset:-2
Orientation:reverse strand
Alignment:--ATGMATATTCATG
AYATGYATATGCATR
 A C G T A C G T G T C A A C G T A C T G G T C A C G T A A G C T C G T A C A G T C A G T A G T C T G C A A G C T C T A G
C T G A G A C T C T G A G A C T C T A G G A T C C T G A G A C T C T G A G A C T C T A G G A T C C T G A G C A T C T A G

Pit1(Homeobox)/GCrat-Pit1-ChIP-Seq(GSE58009)/Homer

Match Rank:4
Score:0.84
Offset:0
Orientation:forward strand
Alignment:ATGMATATTCATG
ATGMATATDC---
 G T C A A C G T A C T G G T C A C G T A A G C T C G T A C A G T C A G T A G T C T G C A A G C T C T A G
G C T A A C G T C T A G G T A C G C T A G A C T C T G A G C A T C A T G G A T C A C G T A C G T A C G T

PB0178.1_Sox8_2/Jaspar

Match Rank:5
Score:0.69
Offset:4
Orientation:forward strand
Alignment:ATGMATATTCATG-----
----ACATTCATGACACG
 G T C A A C G T A C T G G T C A C G T A A G C T C G T A C A G T C A G T A G T C T G C A A G C T C T A G A C G T A C G T A C G T A C G T A C G T
A C G T A C G T A C G T A C G T C G T A G A T C G C T A A C G T C G A T G A T C T C G A A C G T C T A G G C T A G T A C G T C A A T G C T A C G

Arid5a/MA0602.1/Jaspar

Match Rank:6
Score:0.69
Offset:1
Orientation:forward strand
Alignment:ATGMATATTCATG--
-CTAATATTGCTAAA
 G T C A A C G T A C T G G T C A C G T A A G C T C G T A C A G T C A G T A G T C T G C A A G C T C T A G A C G T A C G T
A C G T T A G C G A C T C T G A C G T A C G A T C G T A C G A T A G C T C T A G T G A C C G A T C T G A C G T A G C T A

PB0002.1_Arid5a_1/Jaspar

Match Rank:7
Score:0.69
Offset:1
Orientation:forward strand
Alignment:ATGMATATTCATG--
-CTAATATTGCTAAA
 G T C A A C G T A C T G G T C A C G T A A G C T C G T A C A G T C A G T A G T C T G C A A G C T C T A G A C G T A C G T
A C G T T A G C G A C T C T G A C G T A C G A T C G T A C G A T A G C T C T A G T G A C C G A T C T G A C G T A G C T A

POU2F2/MA0507.1/Jaspar

Match Rank:8
Score:0.67
Offset:-2
Orientation:reverse strand
Alignment:--ATGMATATTCATG
ATATGCAAATNNN--
 A C G T A C G T G T C A A C G T A C T G G T C A C G T A A G C T C G T A C A G T C A G T A G T C T G C A A G C T C T A G
C G T A G A C T C T G A A C G T C T A G G A T C C G T A C G T A C G T A C G A T C A T G G T C A C T G A A C G T A C G T

PB0170.1_Sox17_2/Jaspar

Match Rank:9
Score:0.66
Offset:0
Orientation:forward strand
Alignment:ATGMATATTCATG----
GACCACATTCATACAAT
 G T C A A C G T A C T G G T C A C G T A A G C T C G T A C A G T C A G T A G T C T G C A A G C T C T A G A C G T A C G T A C G T A C G T
T A C G G C T A A G T C G T A C G T C A A G T C G C T A A G C T C G A T T G A C C T G A A G C T T C G A G A T C T C G A C G T A C G A T

PH0148.1_Pou3f3/Jaspar

Match Rank:10
Score:0.63
Offset:-5
Orientation:forward strand
Alignment:-----ATGMATATTCATG
AAAATATGCATAATAAA-
 A C G T A C G T A C G T A C G T A C G T G T C A A C G T A C T G G T C A C G T A A G C T C G T A C A G T C A G T A G T C T G C A A G C T C T A G
G C T A G C T A C T A G C G T A G A C T G C T A G A C T C A T G G T A C C T G A C G A T C G T A G C T A C A G T C T G A C G T A C G T A A C G T