Information for 10-GAATGCTAAT (Motif 19)

T C A G G T C A G C T A C G A T T C A G G T A C G C A T T C G A C G T A C A G T
Reverse Opposite:
G T C A G C A T A G C T C G T A C A T G A G T C G C T A C G A T C A G T A G T C
p-value:1e-10
log p-value:-2.530e+01
Information Content per bp:1.661
Number of Target Sequences with motif38.0
Percentage of Target Sequences with motif4.35%
Number of Background Sequences with motif526.2
Percentage of Background Sequences with motif1.16%
Average Position of motif in Targets49.6 +/- 26.2bp
Average Position of motif in Background47.6 +/- 34.9bp
Strand Bias (log2 ratio + to - strand density)-0.4
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

Brn1(POU,Homeobox)/NPC-Brn1-ChIP-Seq(GSE35496)/Homer

Match Rank:1
Score:0.83
Offset:1
Orientation:forward strand
Alignment:GAATGCTAAT---
-TATGCWAATBAV
 T C A G G T C A G C T A C G A T T C A G G T A C G C A T T C G A C G T A C A G T A C G T A C G T A C G T
A C G T G A C T C G T A A C G T A C T G A G T C C G T A C T G A C G T A C A G T A C G T G T C A T C A G

Oct6(POU,Homeobox)/NPC-Pou3f1-ChIP-Seq(GSE35496)/Homer

Match Rank:2
Score:0.82
Offset:1
Orientation:forward strand
Alignment:GAATGCTAAT---
-WATGCAAATGAG
 T C A G G T C A G C T A C G A T T C A G G T A C G C A T T C G A C G T A C A G T A C G T A C G T A C G T
A C G T G C A T C G T A C G A T A C T G A G T C G C T A C T G A C G T A C A G T A C T G C G T A T C A G

Pou2f3/MA0627.1/Jaspar

Match Rank:3
Score:0.80
Offset:-2
Orientation:forward strand
Alignment:--GAATGCTAAT----
TTGTATGCAAATTAGA
 A C G T A C G T T C A G G T C A G C T A C G A T T C A G G T A C G C A T T C G A C G T A C A G T A C G T A C G T A C G T A C G T
A C G T G C A T C A T G G A C T C G T A A G C T A C T G A G T C C G T A C G T A C G T A C A G T A C G T G T C A C T A G T G C A

PH0145.1_Pou2f3/Jaspar

Match Rank:4
Score:0.80
Offset:-2
Orientation:forward strand
Alignment:--GAATGCTAAT----
TTGTATGCAAATTAGA
 A C G T A C G T T C A G G T C A G C T A C G A T T C A G G T A C G C A T T C G A C G T A C A G T A C G T A C G T A C G T A C G T
A C G T G C A T C A T G G A C T C G T A A G C T A C T G A G T C C G T A C G T A C G T A C A G T A C G T G T C A C T A G T G C A

PH0144.1_Pou2f2/Jaspar

Match Rank:5
Score:0.79
Offset:-2
Orientation:forward strand
Alignment:--GAATGCTAAT----
TTGTATGCAAATTAGA
 A C G T A C G T T C A G G T C A G C T A C G A T T C A G G T A C G C A T T C G A C G T A C A G T A C G T A C G T A C G T A C G T
A G C T G C A T C A T G G C A T C G T A A G C T C A T G A G T C C G T A C G T A C G T A C G A T C A G T G C T A C T A G T G C A

POU3F4/MA0789.1/Jaspar

Match Rank:6
Score:0.79
Offset:1
Orientation:forward strand
Alignment:GAATGCTAAT
-TATGCAAAT
 T C A G G T C A G C T A C G A T T C A G G T A C G C A T T C G A C G T A C A G T
A C G T G C A T C T G A G A C T C A T G A G T C C G T A G C T A C G T A C G A T

POU5F1B/MA0792.1/Jaspar

Match Rank:7
Score:0.77
Offset:1
Orientation:forward strand
Alignment:GAATGCTAAT
-TATGCAAAT
 T C A G G T C A G C T A C G A T T C A G G T A C G C A T T C G A C G T A C A G T
A C G T G A C T C G T A A G C T C A T G A G T C C G T A C G T A C G T A C G A T

Oct4(POU,Homeobox)/mES-Oct4-ChIP-Seq(GSE11431)/Homer

Match Rank:8
Score:0.76
Offset:0
Orientation:reverse strand
Alignment:GAATGCTAAT
TTATGCAAAT
 T C A G G T C A G C T A C G A T T C A G G T A C G C A T T C G A C G T A C A G T
C G A T G C A T C T G A A C G T A C T G A G T C C G T A C T G A C G T A C G A T

POU3F2/MA0787.1/Jaspar

Match Rank:9
Score:0.75
Offset:0
Orientation:forward strand
Alignment:GAATGCTAAT--
TTATGCAAATTA
 T C A G G T C A G C T A C G A T T C A G G T A C G C A T T C G A C G T A C A G T A C G T A C G T
C G A T G C A T T C G A G A C T C A T G A G T C G C T A C G T A G C T A C G A T A C G T G C T A

POU2F2/MA0507.1/Jaspar

Match Rank:10
Score:0.75
Offset:0
Orientation:reverse strand
Alignment:GAATGCTAAT---
ATATGCAAATNNN
 T C A G G T C A G C T A C G A T T C A G G T A C G C A T T C G A C G T A C A G T A C G T A C G T A C G T
C G T A G A C T C T G A A C G T C T A G G A T C C G T A C G T A C G T A C G A T C A T G G T C A C T G A