Information for 9-ACGTCTGCCA (Motif 18)

T G C A G T A C A C T G C A G T T A G C C G A T A T C G G T A C T G A C C T G A
Reverse Opposite:
G A C T A C T G C A T G T A G C G C T A A T C G G T C A T G A C C A T G A C G T
p-value:1e-11
log p-value:-2.544e+01
Information Content per bp:1.577
Number of Target Sequences with motif17.0
Percentage of Target Sequences with motif1.95%
Number of Background Sequences with motif93.7
Percentage of Background Sequences with motif0.21%
Average Position of motif in Targets47.3 +/- 30.3bp
Average Position of motif in Background49.0 +/- 29.3bp
Strand Bias (log2 ratio + to - strand density)0.2
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

Tbox:Smad(T-box,MAD)/ESCd5-Smad2_3-ChIP-Seq(GSE29422)/Homer

Match Rank:1
Score:0.71
Offset:1
Orientation:reverse strand
Alignment:ACGTCTGCCA---
-TGTCTGDCACCT
 T G C A G T A C A C T G C A G T T A G C C G A T A T C G G T A C T G A C C T G A A C G T A C G T A C G T
A C G T G C A T A C T G C G A T A G T C A C G T T A C G C A T G A G T C C G T A T A G C G A T C G A C T

SMAD2::SMAD3::SMAD4/MA0513.1/Jaspar

Match Rank:2
Score:0.68
Offset:0
Orientation:forward strand
Alignment:ACGTCTGCCA---
CTGTCTGTCACCT
 T G C A G T A C A C T G C A G T T A G C C G A T A T C G G T A C T G A C C T G A A C G T A C G T A C G T
T A G C G C A T T C A G A C G T A G T C A C G T T A C G C A G T A T G C G C T A T A G C G A T C G A C T

NFIC/MA0161.1/Jaspar

Match Rank:3
Score:0.65
Offset:5
Orientation:reverse strand
Alignment:ACGTCTGCCA-
-----TGCCAA
 T G C A G T A C A C T G C A G T T A G C C G A T A T C G G T A C T G A C C T G A A C G T
A C G T A C G T A C G T A C G T A C G T G C A T C A T G G A T C A G T C G T C A C T G A

Smad4(MAD)/ESC-SMAD4-ChIP-Seq(GSE29422)/Homer

Match Rank:4
Score:0.63
Offset:-2
Orientation:forward strand
Alignment:--ACGTCTGCCA
VBSYGTCTGG--
 A C G T A C G T T G C A G T A C A C T G C A G T T A G C C G A T A T C G G T A C T G A C C T G A
T A C G A T C G T A G C G A T C A C T G A C G T A G T C A C G T C T A G A T C G A C G T A C G T

NFIX/MA0671.1/Jaspar

Match Rank:5
Score:0.63
Offset:3
Orientation:forward strand
Alignment:ACGTCTGCCA--
---CGTGCCAAG
 T G C A G T A C A C T G C A G T T A G C C G A T A T C G G T A C T G A C C T G A A C G T A C G T
A C G T A C G T A C G T T A G C C A T G G C A T A C T G A T G C A G T C T G C A C T G A T A C G

NF1-halfsite(CTF)/LNCaP-NF1-ChIP-Seq(Unpublished)/Homer

Match Rank:6
Score:0.63
Offset:4
Orientation:forward strand
Alignment:ACGTCTGCCA--
----TTGCCAAG
 T G C A G T A C A C T G C A G T T A G C C G A T A T C G G T A C T G A C C T G A A C G T A C G T
A C G T A C G T A C G T A C G T A G C T A C G T A C T G A T G C A G T C C G T A C T G A T A C G

Meis1(Homeobox)/MastCells-Meis1-ChIP-Seq(GSE48085)/Homer

Match Rank:7
Score:0.62
Offset:2
Orientation:forward strand
Alignment:ACGTCTGCCA--
--VGCTGWCAVB
 T G C A G T A C A C T G C A G T T A G C C G A T A T C G G T A C T G A C C T G A A C G T A C G T
A C G T A C G T T C A G T A C G T A G C A C G T A C T G C G A T A G T C C G T A T A C G A G T C

Smad2(MAD)/ES-SMAD2-ChIP-Seq(GSE29422)/Homer

Match Rank:8
Score:0.61
Offset:0
Orientation:forward strand
Alignment:ACGTCTGCCA
CTGTCTGG--
 T G C A G T A C A C T G C A G T T A G C C G A T A T C G G T A C T G A C C T G A
A T G C G A C T A C T G C A G T G A T C A C G T T A C G T A C G A C G T A C G T

NFIA/MA0670.1/Jaspar

Match Rank:9
Score:0.60
Offset:3
Orientation:forward strand
Alignment:ACGTCTGCCA---
---GGTGCCAAGT
 T G C A G T A C A C T G C A G T T A G C C G A T A T C G G T A C T G A C C T G A A C G T A C G T A C G T
A C G T A C G T A C G T T C A G C A T G A C G T A C T G A G T C A G T C C G T A C G T A T C A G C G A T

Tlx?(NR)/NPC-H3K4me1-ChIP-Seq(GSE16256)/Homer

Match Rank:10
Score:0.60
Offset:-3
Orientation:reverse strand
Alignment:---ACGTCTGCCA-
TGGCAGNCTGCCAG
 A C G T A C G T A C G T T G C A G T A C A C T G C A G T T A G C C G A T A T C G G T A C T G A C C T G A A C G T
C A G T A C T G A T C G T G A C G C T A A C T G T A G C G T A C C G A T A C T G T A G C G T A C G C T A T C A G