Information for 10-CCTCAGGAGGGAG (Motif 17)

A G T C G T A C A C G T A G T C C G T A A C T G A C T G C G T A A C T G A T C G C T A G C G T A C T A G
Reverse Opposite:
A G T C A C G T A G T C A T G C A G T C A C G T A G T C A G T C A C G T A C T G C G T A A C T G A C T G
p-value:1e-11
log p-value:-2.618e+01
Information Content per bp:1.913
Number of Target Sequences with motif6.0
Percentage of Target Sequences with motif0.69%
Number of Background Sequences with motif2.8
Percentage of Background Sequences with motif0.01%
Average Position of motif in Targets46.0 +/- 21.2bp
Average Position of motif in Background73.4 +/- 17.3bp
Strand Bias (log2 ratio + to - strand density)2.3
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

Unknown-ESC-element(?)/mES-Nanog-ChIP-Seq(GSE11724)/Homer

Match Rank:1
Score:0.68
Offset:1
Orientation:forward strand
Alignment:CCTCAGGAGGGAG
-CACAGCAGGGGG
 A G T C G T A C A C G T A G T C C G T A A C T G A C T G C G T A A C T G A T C G C T A G C G T A C T A G
A C G T T G A C G C T A T G A C C G T A T C A G G A T C C G T A C A T G C A T G C T A G C T A G C T A G

E2F6/MA0471.1/Jaspar

Match Rank:2
Score:0.63
Offset:4
Orientation:forward strand
Alignment:CCTCAGGAGGGAG--
----GGGCGGGAAGG
 A G T C G T A C A C G T A G T C C G T A A C T G A C T G C G T A A C T G A T C G C T A G C G T A C T A G A C G T A C G T
A C G T A C G T A C G T A C G T C T A G T C A G A C T G G T A C C T A G A C T G T A C G C G T A C T G A T C A G T C A G

Zic3(Zf)/mES-Zic3-ChIP-Seq(GSE37889)/Homer

Match Rank:3
Score:0.61
Offset:0
Orientation:reverse strand
Alignment:CCTCAGGAGGGAG--
DCHCAGCAGGRGGCC
 A G T C G T A C A C G T A G T C C G T A A C T G A C T G C G T A A C T G A T C G C T A G C G T A C T A G A C G T A C G T
C A T G T G A C G T C A A T G C G C T A T A C G A G T C C T G A C A T G A T C G C T A G C T A G A T C G A T G C G T A C

AP-2gamma(AP2)/MCF7-TFAP2C-ChIP-Seq(GSE21234)/Homer

Match Rank:4
Score:0.58
Offset:-4
Orientation:reverse strand
Alignment:----CCTCAGGAGGGAG
WTGSCCTSAGGS-----
 A C G T A C G T A C G T A C G T A G T C G T A C A C G T A G T C C G T A A C T G A C T G C G T A A C T G A T C G C T A G C G T A C T A G
G C T A G A C T C A T G A T G C A G T C A G T C G A C T T A C G C T G A C T A G A C T G T A G C A C G T A C G T A C G T A C G T A C G T

Zic(Zf)/Cerebellum-ZIC1.2-ChIP-Seq(GSE60731)/Homer

Match Rank:5
Score:0.58
Offset:0
Orientation:reverse strand
Alignment:CCTCAGGAGGGAG
DCTCAGCAGG---
 A G T C G T A C A C G T A G T C C G T A A C T G A C T G C G T A A C T G A T C G C T A G C G T A C T A G
C A G T G T A C G C A T A G T C G C T A A C T G A G T C C T G A A C T G A C T G A C G T A C G T A C G T

AP-2alpha(AP2)/Hela-AP2alpha-ChIP-Seq(GSE31477)/Homer

Match Rank:6
Score:0.57
Offset:-4
Orientation:forward strand
Alignment:----CCTCAGGAGGGAG
ATGCCCTGAGGC-----
 A C G T A C G T A C G T A C G T A G T C G T A C A C G T A G T C C G T A A C T G A C T G C G T A A C T G A T C G C T A G C G T A C T A G
G C T A C G A T C A T G A T G C A G T C A G T C G A C T T A C G T C G A C T A G A C T G T A G C A C G T A C G T A C G T A C G T A C G T

TFAP2B(var.2)/MA0812.1/Jaspar

Match Rank:7
Score:0.56
Offset:-2
Orientation:forward strand
Alignment:--CCTCAGGAGGGAG
AGCCTCAGGCA----
 A C G T A C G T A G T C G T A C A C G T A G T C C G T A A C T G A C T G C G T A A C T G A T C G C T A G C G T A C T A G
G T C A T A C G A T G C A G T C A G C T T A G C T G C A T C A G T A C G T A G C C G T A A C G T A C G T A C G T A C G T

PB0088.1_Tcfap2e_1/Jaspar

Match Rank:8
Score:0.56
Offset:-4
Orientation:reverse strand
Alignment:----CCTCAGGAGGGAG
NTNGCCTCAGGCNNN--
 A C G T A C G T A C G T A C G T A G T C G T A C A C G T A G T C C G T A A C T G A C T G C G T A A C T G A T C G C T A G C G T A C T A G
G C T A C A G T G A C T A T C G A G T C A G T C A G C T T A G C T C G A T C A G A C T G T A G C C G T A C G T A C G A T A C G T A C G T

ELF3(ETS)/PDAC-ELF3-ChIP-Seq(GSE64557)/Homer

Match Rank:9
Score:0.56
Offset:4
Orientation:forward strand
Alignment:CCTCAGGAGGGAG-
----ANCAGGAAGT
 A G T C G T A C A C G T A G T C C G T A A C T G A C T G C G T A A C T G A T C G C T A G C G T A C T A G A C G T
A C G T A C G T A C G T A C G T C G T A T G A C T A G C T G C A A C T G A C T G C G T A C G T A T C A G G A C T

E2F6(E2F)/Hela-E2F6-ChIP-Seq(GSE31477)/Homer

Match Rank:10
Score:0.56
Offset:5
Orientation:forward strand
Alignment:CCTCAGGAGGGAG--
-----GGCGGGAARN
 A G T C G T A C A C G T A G T C C G T A A C T G A C T G C G T A A C T G A T C G C T A G C G T A C T A G A C G T A C G T
A C G T A C G T A C G T A C G T A C G T T A C G T A C G G T A C A T C G A C T G T A C G T C G A C T G A T C G A A T C G