Information for 1-ATGAATWATGCAT (Motif 1)

G T C A A C G T A C T G G T C A C G T A A C G T G C A T G T C A A C G T C A T G A T G C C G T A C G A T
Reverse Opposite:
C G T A A C G T T A C G G T A C C G T A A C G T C G T A C G T A A C G T A C G T A G T C G T C A A C G T
p-value:1e-36
log p-value:-8.413e+01
Information Content per bp:1.812
Number of Target Sequences with motif19.0
Percentage of Target Sequences with motif2.17%
Number of Background Sequences with motif5.5
Percentage of Background Sequences with motif0.01%
Average Position of motif in Targets44.5 +/- 22.0bp
Average Position of motif in Background60.7 +/- 14.5bp
Strand Bias (log2 ratio + to - strand density)-0.2
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

OCT:OCT-short(POU,Homeobox)/NPC-OCT6-ChIP-Seq(GSE43916)/Homer

Match Rank:1
Score:0.93
Offset:-2
Orientation:reverse strand
Alignment:--ATGAATWATGCAT
WYATGCATWATGCAT
 A C G T A C G T G T C A A C G T A C T G G T C A C G T A A C G T G C A T G T C A A C G T C A T G A T G C C G T A C G A T
C G T A A G C T C G T A A C G T A C T G G T A C C G T A A C G T C G A T C G T A A C G T A C T G A G T C C G T A C G A T

Pit1+1bp(Homeobox)/GCrat-Pit1-ChIP-Seq(GSE58009)/Homer

Match Rank:2
Score:0.93
Offset:1
Orientation:reverse strand
Alignment:ATGAATWATGCAT
-TGAATTATGCAT
 G T C A A C G T A C T G G T C A C G T A A C G T G C A T G T C A A C G T C A T G A T G C C G T A C G A T
A C G T C G A T C T A G G T C A G C T A C G A T G C A T G C T A C G A T C A T G G A T C G C T A C G A T

OCT:OCT(POU,Homeobox,IR1)/NPC-Brn2-ChIP-Seq(GSE35496)/Homer

Match Rank:3
Score:0.92
Offset:-2
Orientation:reverse strand
Alignment:--ATGAATWATGCAT
TCATGAATWATTCAT
 A C G T A C G T G T C A A C G T A C T G G T C A C G T A A C G T G C A T G T C A A C G T C A T G A T G C C G T A C G A T
G A C T G A T C G C T A C G A T C T A G G T C A C G T A C G A T G C A T C G T A G C A T C A G T A G T C G T C A C A G T

POU4F1/MA0790.1/Jaspar

Match Rank:4
Score:0.83
Offset:-1
Orientation:reverse strand
Alignment:-ATGAATWATGCAT
CATTAATTATTCAT
 A C G T G T C A A C G T A C T G G T C A C G T A A C G T G C A T G T C A A C G T C A T G A T G C C G T A C G A T
G T A C C T G A A G C T G C A T G C T A G C T A G C A T G C A T C G T A C G A T C A G T G A T C C T G A A G C T

POU4F3/MA0791.1/Jaspar

Match Rank:5
Score:0.82
Offset:-3
Orientation:reverse strand
Alignment:---ATGAATWATGCAT
CTCATTAATTATGCAT
 A C G T A C G T A C G T G T C A A C G T A C T G G T C A C G T A A C G T G C A T G T C A A C G T C A T G A T G C C G T A C G A T
A G T C C A G T G T A C C T G A G A C T G C A T G C T A G C T A G C A T G C A T G C T A C G A T C A T G G A T C T C G A G A C T

POU4F2/MA0683.1/Jaspar

Match Rank:6
Score:0.76
Offset:-3
Orientation:reverse strand
Alignment:---ATGAATWATGCAT
CTCATTAATTATGCAT
 A C G T A C G T A C G T G T C A A C G T A C T G G T C A C G T A A C G T G C A T G T C A A C G T C A T G A T G C C G T A C G A T
A G T C G A C T T G A C T G C A A G C T G A C T C G T A C G T A C G A T G C A T C G T A C G A T C A T G G A T C C T G A G A C T

PH0148.1_Pou3f3/Jaspar

Match Rank:7
Score:0.72
Offset:1
Orientation:reverse strand
Alignment:ATGAATWATGCAT-----
-TNNATTATGCATANNTT
 G T C A A C G T A C T G G T C A C G T A A C G T G C A T G T C A A C G T C A T G A T G C C G T A C G A T A C G T A C G T A C G T A C G T A C G T
A C G T G C A T G C A T G A C T G T C A C G A T C G A T C G T A A G C T C A T G G T A C C T G A C G A T C T G A G C A T G A C T C G A T C G A T

Brn2(POU,Homeobox)/NPC-Brn2-ChIP-Seq(GSE35496)/Homer

Match Rank:8
Score:0.67
Offset:0
Orientation:forward strand
Alignment:ATGAATWATGCAT
ATGAATATTC---
 G T C A A C G T A C T G G T C A C G T A A C G T G C A T G T C A A C G T C A T G A T G C C G T A C G A T
G C T A A G C T T A C G G T C A C T G A C G A T C T G A G C A T C A G T A G T C A C G T A C G T A C G T

PB0176.1_Sox5_2/Jaspar

Match Rank:9
Score:0.65
Offset:-2
Orientation:reverse strand
Alignment:--ATGAATWATGCAT
NNCTNAATTATGANN
 A C G T A C G T G T C A A C G T A C T G G T C A C G T A A C G T G C A T G T C A A C G T C A T G A T G C C G T A C G A T
G A C T G A T C A T G C A C G T G C A T C T G A C G T A C G A T A C G T G T C A G A C T T C A G G C T A C G A T G C T A

NFE2/MA0841.1/Jaspar

Match Rank:10
Score:0.61
Offset:-1
Orientation:reverse strand
Alignment:-ATGAATWATGCAT
GATGAGTCATN---
 A C G T G T C A A C G T A C T G G T C A C G T A A C G T G C A T G T C A A C G T C A T G A T G C C G T A C G A T
T A C G T C G A A C G T C T A G T C G A A T C G C A G T G T A C C T G A A G C T A C T G A C G T A C G T A C G T