Information for 5-CCWTTGTKBC (Motif 5)

A G T C G T A C C G T A A C G T A C G T A C T G C G A T A C T G A C G T G A T C
Reverse Opposite:
C T A G T G C A T G A C G C T A T G A C C G T A G T C A C G A T A C T G C T A G
p-value:1e-18
log p-value:-4.305e+01
Information Content per bp:1.665
Number of Target Sequences with motif85.0
Percentage of Target Sequences with motif9.67%
Number of Background Sequences with motif1395.5
Percentage of Background Sequences with motif3.13%
Average Position of motif in Targets47.6 +/- 27.4bp
Average Position of motif in Background49.7 +/- 30.9bp
Strand Bias (log2 ratio + to - strand density)-0.2
Multiplicity (# of sites on avg that occur together)1.09
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

Sox2/MA0143.3/Jaspar

Match Rank:1
Score:0.93
Offset:0
Orientation:forward strand
Alignment:CCWTTGTKBC
CCTTTGTT--
 A G T C G T A C C G T A A C G T A C G T A C T G C G A T A C T G A C G T G A T C
A G T C A G T C C G A T A C G T A C G T A C T G A C G T A G C T A C G T A C G T

Sox3(HMG)/NPC-Sox3-ChIP-Seq(GSE33059)/Homer

Match Rank:2
Score:0.92
Offset:0
Orientation:forward strand
Alignment:CCWTTGTKBC
CCWTTGTY--
 A G T C G T A C C G T A A C G T A C G T A C T G C G A T A C T G A C G T G A T C
A T G C G A T C C G A T A C G T A C G T A C T G C A G T A G C T A C G T A C G T

Sox17(HMG)/Endoderm-Sox17-ChIP-Seq(GSE61475)/Homer

Match Rank:3
Score:0.88
Offset:0
Orientation:forward strand
Alignment:CCWTTGTKBC
CCATTGTTYB
 A G T C G T A C C G T A A C G T A C G T A C T G C G A T A C T G A C G T G A T C
A T G C G A T C C G T A A G C T C A G T A T C G G C A T A G C T G A C T A C T G

Sox10(HMG)/SciaticNerve-Sox3-ChIP-Seq(GSE35132)/Homer

Match Rank:4
Score:0.88
Offset:0
Orientation:forward strand
Alignment:CCWTTGTKBC
CCWTTGTYYB
 A G T C G T A C C G T A A C G T A C G T A C T G C G A T A C T G A C G T G A T C
A T G C A G T C G C A T A G C T A C G T T C A G C G A T A G C T G A T C A T C G

Sox15(HMG)/CPA-Sox15-ChIP-Seq(GSE62909)/Homer

Match Rank:5
Score:0.87
Offset:-1
Orientation:reverse strand
Alignment:-CCWTTGTKBC
NCCATTGTTY-
 A C G T A G T C G T A C C G T A A C G T A C G T A C T G C G A T A C T G A C G T G A T C
C T A G A G T C G A T C G C T A C G A T A C G T A T C G A C G T A G C T G A C T A C G T

Sox2(HMG)/mES-Sox2-ChIP-Seq(GSE11431)/Homer

Match Rank:6
Score:0.87
Offset:-1
Orientation:forward strand
Alignment:-CCWTTGTKBC
NCCATTGTTC-
 A C G T A G T C G T A C C G T A A C G T A C G T A C T G C G A T A C T G A C G T G A T C
A T G C A G T C G A T C C G T A A C G T A C G T A C T G A C G T A G C T G A T C A C G T

Sox6/MA0515.1/Jaspar

Match Rank:7
Score:0.87
Offset:0
Orientation:forward strand
Alignment:CCWTTGTKBC
CCATTGTTTT
 A G T C G T A C C G T A A C G T A C G T A C T G C G A T A C T G A C G T G A T C
A G T C A G T C C G T A A C G T A C G T A C T G A C G T A G C T G A C T A G C T

PB0168.1_Sox14_2/Jaspar

Match Rank:8
Score:0.85
Offset:-3
Orientation:reverse strand
Alignment:---CCWTTGTKBC--
NNNCCATTGTGTNAN
 A C G T A C G T A C G T A G T C G T A C C G T A A C G T A C G T A C T G C G A T A C T G A C G T G A T C A C G T A C G T
A T C G T G A C A C T G A G T C G A T C C G T A A C G T A C G T T A C G G C A T A T C G A G C T T C A G T G C A T C A G

Sox3/MA0514.1/Jaspar

Match Rank:9
Score:0.85
Offset:0
Orientation:forward strand
Alignment:CCWTTGTKBC
CCTTTGTTTT
 A G T C G T A C C G T A A C G T A C G T A C T G C G A T A C T G A C G T G A T C
A T G C A G T C C G A T A C G T A C G T A T C G A C G T A G C T A G C T A G C T

Sox6(HMG)/Myotubes-Sox6-ChIP-Seq(GSE32627)/Homer

Match Rank:10
Score:0.84
Offset:0
Orientation:forward strand
Alignment:CCWTTGTKBC
CCATTGTTNY
 A G T C G T A C C G T A A C G T A C G T A C T G C G A T A C T G A C G T G A T C
A T G C G T A C C G T A A G C T G C A T T A C G A G C T A G C T A G T C A G C T