Information for 20-CATKGKCCATGCA (Motif 31)

A G T C C G T A C A G T A C G T A C T G A C G T T A G C A G T C C G T A A C G T A C T G A G T C C G T A
Reverse Opposite:
C G A T A C T G G T A C C G T A A C G T A C T G A C T G G T A C A G T C G T A C G C T A A C G T A C T G
p-value:1e-8
log p-value:-2.057e+01
Information Content per bp:1.829
Number of Target Sequences with motif6.0
Percentage of Target Sequences with motif0.68%
Number of Background Sequences with motif5.9
Percentage of Background Sequences with motif0.01%
Average Position of motif in Targets44.4 +/- 25.9bp
Average Position of motif in Background57.6 +/- 27.1bp
Strand Bias (log2 ratio + to - strand density)0.4
Multiplicity (# of sites on avg that occur together)1.17
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

HNF4a(NR),DR1/HepG2-HNF4a-ChIP-Seq(GSE25021)/Homer

Match Rank:1
Score:0.56
Offset:-7
Orientation:forward strand
Alignment:-------CATKGKCCATGCA
CANAGNNCAAAGTCCA----
 A C G T A C G T A C G T A C G T A C G T A C G T A C G T A G T C C G T A C A G T A C G T A C T G A C G T T A G C A G T C C G T A A C G T A C T G A G T C C G T A
G T A C G C T A T C A G C T G A C T A G C A T G A G C T G A T C T G C A T C G A C T G A A C T G C A G T A G T C G A T C G C T A A C G T A C G T A C G T A C G T

HNF4G/MA0484.1/Jaspar

Match Rank:2
Score:0.55
Offset:-6
Orientation:forward strand
Alignment:------CATKGKCCATGCA
AGAGTCCAAAGTCCA----
 A C G T A C G T A C G T A C G T A C G T A C G T A G T C C G T A C A G T A C G T A C T G A C G T T A G C A G T C C G T A A C G T A C T G A G T C C G T A
C G T A T C A G C T G A C T A G C A G T A G T C A G T C T G C A T C G A C T G A C A T G C A G T A G T C G A T C G C T A A C G T A C G T A C G T A C G T

Sox17/MA0078.1/Jaspar

Match Rank:3
Score:0.55
Offset:-2
Orientation:forward strand
Alignment:--CATKGKCCATGCA
CTCATTGTC------
 A C G T A C G T A G T C C G T A C A G T A C G T A C T G A C G T T A G C A G T C C G T A A C G T A C T G A G T C C G T A
G A C T G A C T G A T C C G T A A G C T A C G T A C T G A C G T A T G C A C G T A C G T A C G T A C G T A C G T A C G T

POL004.1_CCAAT-box/Jaspar

Match Rank:4
Score:0.54
Offset:1
Orientation:forward strand
Alignment:CATKGKCCATGCA
-ACTAGCCAATCA
 A G T C C G T A C A G T A C G T A C T G A C G T T A G C A G T C C G T A A C G T A C T G A G T C C G T A
A C G T G T C A A G T C G A C T C T G A C T A G A G T C A G T C C G T A C G T A C G A T T A G C T C G A

PB0178.1_Sox8_2/Jaspar

Match Rank:5
Score:0.54
Offset:6
Orientation:forward strand
Alignment:CATKGKCCATGCA-------
------ACATTCATGACACG
 A G T C C G T A C A G T A C G T A C T G A C G T T A G C A G T C C G T A A C G T A C T G A G T C C G T A A C G T A C G T A C G T A C G T A C G T A C G T A C G T
A C G T A C G T A C G T A C G T A C G T A C G T C G T A G A T C G C T A A C G T C G A T G A T C T C G A A C G T C T A G G C T A G T A C G T C A A T G C T A C G

PB0132.1_Hbp1_2/Jaspar

Match Rank:6
Score:0.53
Offset:-6
Orientation:forward strand
Alignment:------CATKGKCCATGCA
TGTTCCCATTGTGTACT--
 A C G T A C G T A C G T A C G T A C G T A C G T A G T C C G T A C A G T A C G T A C T G A C G T T A G C A G T C C G T A A C G T A C T G A G T C C G T A
C G A T C T A G C A G T A G C T A G T C G A T C G A T C C G T A G A C T C G A T C A T G C A G T T C A G G A C T C T G A A T G C G C A T A C G T A C G T

PB0028.1_Hbp1_1/Jaspar

Match Rank:7
Score:0.53
Offset:1
Orientation:reverse strand
Alignment:CATKGKCCATGCA----
-NNCATTCATTCATNNN
 A G T C C G T A C A G T A C G T A C T G A C G T T A G C A G T C C G T A A C G T A C T G A G T C C G T A A C G T A C G T A C G T A C G T
A C G T T C G A G A C T G T A C C G T A A G C T G A C T T G A C C G T A C G A T G C A T A T G C C G T A C G A T G C T A A C T G C G A T

Nanog(Homeobox)/mES-Nanog-ChIP-Seq(GSE11724)/Homer

Match Rank:8
Score:0.52
Offset:4
Orientation:forward strand
Alignment:CATKGKCCATGCA-
----GGCCATTAAC
 A G T C C G T A C A G T A C G T A C T G A C G T T A G C A G T C C G T A A C G T A C T G A G T C C G T A A C G T
A C G T A C G T A C G T A C G T C T A G T A C G G A T C G T A C G C T A A G C T A G C T G T C A T C G A T A G C

NFY(CCAAT)/Promoter/Homer

Match Rank:9
Score:0.51
Offset:-2
Orientation:reverse strand
Alignment:--CATKGKCCATGCA
CCGATTGGCT-----
 A C G T A C G T A G T C C G T A C A G T A C G T A C T G A C G T T A G C A G T C C G T A A C G T A C T G A G T C C G T A
A T G C A G T C A T C G C G T A A C G T A C G T A C T G A C T G G A T C A G C T A C G T A C G T A C G T A C G T A C G T

Pit1(Homeobox)/GCrat-Pit1-ChIP-Seq(GSE58009)/Homer

Match Rank:10
Score:0.51
Offset:4
Orientation:reverse strand
Alignment:CATKGKCCATGCA-
----GHATATKCAT
 A G T C C G T A C A G T A C G T A C T G A C G T T A G C A G T C C G T A A C G T A C T G A G T C C G T A A C G T
A C G T A C G T A C G T A C G T C T A G G T A C C G T A G A C T C T G A C G A T C A T G G A T C C G T A C G A T