Information for 3-GTTGCCATGGYRA (Motif 3)

A C T G A G C T A G C T C A T G A G T C A G T C C T G A C G A T C T A G C A T G G A C T C T A G G T C A
Reverse Opposite:
C A G T G A T C C T G A G A T C A G T C C G T A A G C T C T A G T C A G G T A C C T G A C T G A G T A C
p-value:1e-33
log p-value:-7.759e+01
Information Content per bp:1.703
Number of Target Sequences with motif43.0
Percentage of Target Sequences with motif4.89%
Number of Background Sequences with motif155.0
Percentage of Background Sequences with motif0.35%
Average Position of motif in Targets54.0 +/- 24.3bp
Average Position of motif in Background47.5 +/- 32.3bp
Strand Bias (log2 ratio + to - strand density)-0.2
Multiplicity (# of sites on avg that occur together)1.07
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

Rfx1(HTH)/NPC-H3K4me1-ChIP-Seq(GSE16256)/Homer

Match Rank:1
Score:0.97
Offset:-1
Orientation:forward strand
Alignment:-GTTGCCATGGYRA
NGTTGCCATGGCAA
 A C G T A C T G A G C T A G C T C A T G A G T C A G T C C T G A C G A T C T A G C A T G G A C T C T A G G T C A
A C T G T C A G A G C T G A C T C A T G A G T C A G T C G C T A C G A T C T A G T C A G G T A C C T G A T C G A

Rfx1/MA0509.1/Jaspar

Match Rank:2
Score:0.95
Offset:0
Orientation:reverse strand
Alignment:GTTGCCATGGYRA-
GTTGCCATGGNAAC
 A C T G A G C T A G C T C A T G A G T C A G T C C T G A C G A T C T A G C A T G G A C T C T A G G T C A A C G T
A C T G A G C T G A C T C A T G A G T C A G T C C G T A C G A T C T A G T C A G T G A C C T G A T G C A G A T C

X-box(HTH)/NPC-H3K4me1-ChIP-Seq(GSE16256)/Homer

Match Rank:3
Score:0.95
Offset:-1
Orientation:forward strand
Alignment:-GTTGCCATGGYRA
GGTTGCCATGGCAA
 A C G T A C T G A G C T A G C T C A T G A G T C A G T C C T G A C G A T C T A G C A T G G A C T C T A G G T C A
C A T G C T A G A G C T G A C T C A T G A G T C G A T C G C T A C G A T C T A G T C A G G T A C C T G A T C G A

Rfx2(HTH)/LoVo-RFX2-ChIP-Seq(GSE49402)/Homer

Match Rank:4
Score:0.91
Offset:0
Orientation:forward strand
Alignment:GTTGCCATGGYRA--
GTTGCCATGGCAACM
 A C T G A G C T A G C T C A T G A G T C A G T C C T G A C G A T C T A G C A T G G A C T C T A G G T C A A C G T A C G T
C T A G A G C T G A C T C A T G A G T C A G T C G T C A C A G T C T A G T C A G G T A C C T G A T C G A G A T C T G A C

RFX(HTH)/K562-RFX3-ChIP-Seq(SRA012198)/Homer

Match Rank:5
Score:0.90
Offset:-2
Orientation:forward strand
Alignment:--GTTGCCATGGYRA-
CGGTTGCCATGGCAAC
 A C G T A C G T A C T G A G C T A G C T C A T G A G T C A G T C C T G A C G A T C T A G C A T G G A C T C T A G G T C A A C G T
A G T C A T C G C T A G A G C T G A C T C T A G A G T C A G T C G C T A C A G T T C A G T C A G G A T C C T G A T C G A G A T C

RFX3/MA0798.1/Jaspar

Match Rank:6
Score:0.90
Offset:-1
Orientation:reverse strand
Alignment:-GTTGCCATGGYRA--
CGTTGCCATGGCAACN
 A C G T A C T G A G C T A G C T C A T G A G T C A G T C C T G A C G A T C T A G C A T G G A C T C T A G G T C A A C G T A C G T
A T G C C T A G A G C T G C A T C T A G A G T C A G T C C G T A G C A T T C A G T C A G G A T C C G T A C T G A G A T C T A C G

RFX4/MA0799.1/Jaspar

Match Rank:7
Score:0.89
Offset:-1
Orientation:reverse strand
Alignment:-GTTGCCATGGYRA--
CGTTGCCATGGCAACN
 A C G T A C T G A G C T A G C T C A T G A G T C A G T C C T G A C G A T C T A G C A T G G A C T C T A G G T C A A C G T A C G T
A T G C C T A G A G C T G C A T C T A G A G T C A G T C C G T A G C A T T C A G T C A G G A T C C G T A C G T A G A T C T A C G

RFX2/MA0600.2/Jaspar

Match Rank:8
Score:0.89
Offset:-1
Orientation:forward strand
Alignment:-GTTGCCATGGYRA--
CGTTGCCATGGCAACG
 A C G T A C T G A G C T A G C T C A T G A G T C A G T C C T G A C G A T C T A G C A T G G A C T C T A G G T C A A C G T A C G T
A T G C T C A G G A C T G C A T C T A G A G T C A G T C C G T A G C A T T C A G T C A G G A T C C G T A C T G A G A T C T A C G

RFX5/MA0510.2/Jaspar

Match Rank:9
Score:0.88
Offset:-1
Orientation:forward strand
Alignment:-GTTGCCATGGYRA--
CGTTGCCATGGCAACG
 A C G T A C T G A G C T A G C T C A T G A G T C A G T C C T G A C G A T C T A G C A T G G A C T C T A G G T C A A C G T A C G T
A T G C C T A G A G C T G A C T C T A G A G T C A G T C C G T A G C A T T C A G T C A G G A T C C T G A T G C A G A T C T A C G

PB0055.1_Rfx4_1/Jaspar

Match Rank:10
Score:0.81
Offset:-3
Orientation:reverse strand
Alignment:---GTTGCCATGGYRA
NNCGTTGCTATGGNN-
 A C G T A C G T A C G T A C T G A G C T A G C T C A T G A G T C A G T C C T G A C G A T C T A G C A T G G A C T C T A G G T C A
G C T A A G T C A T G C C T A G A G C T G A C T C T A G A G T C A G C T C T G A C A G T T A C G A T C G C A G T T C G A A C G T