Information for 11-GGCCGGCCAGTAAAGG (Motif 29)

C T A G A C T G A G T C G T A C A T C G A C T G A T G C A G T C C G T A A C T G A C G T C G T A C T G A C G T A C T A G A C T G
Reverse Opposite:
A G T C A G T C A C G T A G C T A C G T G T C A A G T C A C G T A C T G A T C G A G T C A T G C A C T G A C T G A G T C G A T C
p-value:1e-9
log p-value:-2.099e+01
Information Content per bp:1.910
Number of Target Sequences with motif5.0
Percentage of Target Sequences with motif0.57%
Number of Background Sequences with motif2.7
Percentage of Background Sequences with motif0.01%
Average Position of motif in Targets69.6 +/- 15.0bp
Average Position of motif in Background38.8 +/- 25.0bp
Strand Bias (log2 ratio + to - strand density)2.0
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

THRa(NR)/C17.2-THRa-ChIP-Seq(GSE38347)/Homer

Match Rank:1
Score:0.52
Offset:4
Orientation:forward strand
Alignment:GGCCGGCCAGTAAAGG---
----GGTCANYTGAGGWCA
 C T A G A C T G A G T C G T A C A T C G A C T G A T G C A G T C C G T A A C T G A C G T C G T A C T G A C G T A C T A G A C T G A C G T A C G T A C G T
A C G T A C G T A C G T A C G T C T A G C A T G A C G T A G T C G C T A A G C T A G T C A G C T T C A G C T G A A C T G C A T G G C A T A T G C C G T A

CTCF/MA0139.1/Jaspar

Match Rank:2
Score:0.50
Offset:3
Orientation:forward strand
Alignment:GGCCGGCCAGTAAAGG------
---TGGCCACCAGGGGGCGCTA
 C T A G A C T G A G T C G T A C A T C G A C T G A T G C A G T C C G T A A C T G A C G T C G T A C T G A C G T A C T A G A C T G A C G T A C G T A C G T A C G T A C G T A C G T
A C G T A C G T A C G T G A C T C A T G C T A G G T A C G T A C C G T A T A G C G A T C C T G A C T A G C T A G C A T G C T A G C A T G G T A C C T A G T A G C G A C T T C G A

TATA-Box(TBP)/Promoter/Homer

Match Rank:3
Score:0.49
Offset:4
Orientation:reverse strand
Alignment:GGCCGGCCAGTAAAGG
----GNCTATAAAAGG
 C T A G A C T G A G T C G T A C A T C G A C T G A T G C A G T C C G T A A C T G A C G T C G T A C T G A C G T A C T A G A C T G
A C G T A C G T A C G T A C G T A T C G A T C G A T G C A G C T G C T A A C G T C G T A C G T A C T G A C T G A C T A G T A C G

PH0056.1_Hoxa9/Jaspar

Match Rank:4
Score:0.49
Offset:2
Orientation:forward strand
Alignment:GGCCGGCCAGTAAAGG---
--ACGGCCATAAAATTAAT
 C T A G A C T G A G T C G T A C A T C G A C T G A T G C A G T C C G T A A C T G A C G T C G T A C T G A C G T A C T A G A C T G A C G T A C G T A C G T
A C G T A C G T C T G A T G A C C T A G A T C G G A T C G T A C C T G A C G A T G C T A C G T A C G T A C G T A G C A T C A G T C G T A C T G A C G A T

EWS:ERG-fusion(ETS)/CADO_ES1-EWS:ERG-ChIP-Seq(SRA014231)/Homer

Match Rank:5
Score:0.48
Offset:5
Orientation:reverse strand
Alignment:GGCCGGCCAGTAAAGG
-----NACAGGAAAT-
 C T A G A C T G A G T C G T A C A T C G A C T G A T G C A G T C C G T A A C T G A C G T C G T A C T G A C G T A C T A G A C T G
A C G T A C G T A C G T A C G T A C G T T A G C C T G A T A G C G T C A A C T G A C T G C G T A C G T A C T G A A G C T A C G T

CTCF(Zf)/CD4+-CTCF-ChIP-Seq(Barski_et_al.)/Homer

Match Rank:6
Score:0.48
Offset:3
Orientation:reverse strand
Alignment:GGCCGGCCAGTAAAGG-------
---TGGCCACCAGGTGGCACTNT
 C T A G A C T G A G T C G T A C A T C G A C T G A T G C A G T C C G T A A C T G A C G T C G T A C T G A C G T A C T A G A C T G A C G T A C G T A C G T A C G T A C G T A C G T A C G T
A C G T A C G T A C G T G A C T C A T G C T A G G T A C G A T C C G T A T A G C G A T C C T G A A C T G T C A G C A G T C T A G C A T G G A T C C T G A T A G C G A C T T C G A A C G T

Unknown(Homeobox)/Limb-p300-ChIP-Seq/Homer

Match Rank:7
Score:0.48
Offset:4
Orientation:forward strand
Alignment:GGCCGGCCAGTAAAGG
----NGCAATTAAA--
 C T A G A C T G A G T C G T A C A T C G A C T G A T G C A G T C C G T A A C T G A C G T C G T A C T G A C G T A C T A G A C T G
A C G T A C G T A C G T A C G T T A C G A T C G G A T C G T C A C T G A G C A T C G A T G C T A T C G A G C T A A C G T A C G T

PBX1(Homeobox)/MCF7-PBX1-ChIP-Seq(GSE28007)/Homer

Match Rank:8
Score:0.47
Offset:1
Orientation:forward strand
Alignment:GGCCGGCCAGTAAAGG
-GSCTGTCACTCA---
 C T A G A C T G A G T C G T A C A T C G A C T G A T G C A G T C C G T A A C T G A C G T C G T A C T G A C G T A C T A G A C T G
A C G T C T A G A T G C A T G C C G A T A C T G G A C T A T G C G C T A T G A C A G C T T A G C G C T A A C G T A C G T A C G T

Nur77(NR)/K562-NR4A1-ChIP-Seq(GSE31363)/Homer

Match Rank:9
Score:0.47
Offset:7
Orientation:reverse strand
Alignment:GGCCGGCCAGTAAAGG---
-------ANGNAAAGGTCA
 C T A G A C T G A G T C G T A C A T C G A C T G A T G C A G T C C G T A A C T G A C G T C G T A C T G A C G T A C T A G A C T G A C G T A C G T A C G T
A C G T A C G T A C G T A C G T A C G T A C G T A C G T C T G A A C T G C A T G C A G T C G T A C G T A C G T A A C T G A C T G A C G T A G T C C G T A

SD0002.1_at_AC_acceptor/Jaspar

Match Rank:10
Score:0.47
Offset:2
Orientation:forward strand
Alignment:GGCCGGCCAGTAAAGG
--AAGGCAAGTGT---
 C T A G A C T G A G T C G T A C A T C G A C T G A T G C A G T C C G T A A C T G A C G T C G T A C T G A C G T A C T A G A C T G
A C G T A C G T T G C A C G T A C T A G A C T G A G T C T C G A C T G A T A C G A C G T C T A G A G C T A C G T A C G T A C G T