Information for 10-GCTGAGCAGACATGAT (Motif 28)

A C T G A G T C A C G T A T C G C G T A A C T G A G T C C G T A A T C G C G T A A T G C C G T A C G A T A C T G C G T A A C G T
Reverse Opposite:
G T C A C G A T A G T C C G T A A C G T A T C G A C G T T A G C A C G T A C T G A G T C A C G T A T G C C G T A A C T G A G T C
p-value:1e-9
log p-value:-2.099e+01
Information Content per bp:1.926
Number of Target Sequences with motif5.0
Percentage of Target Sequences with motif0.57%
Number of Background Sequences with motif2.5
Percentage of Background Sequences with motif0.01%
Average Position of motif in Targets47.8 +/- 20.6bp
Average Position of motif in Background27.1 +/- 9.3bp
Strand Bias (log2 ratio + to - strand density)-0.6
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

Fox:Ebox(Forkhead,bHLH)/Panc1-Foxa2-ChIP-Seq(GSE47459)/Homer

Match Rank:1
Score:0.62
Offset:-3
Orientation:forward strand
Alignment:---GCTGAGCAGACATGAT
NNNVCTGWGYAAACASN--
 A C G T A C G T A C G T A C T G A G T C A C G T A T C G C G T A A C T G A G T C C G T A A T C G C G T A A T G C C G T A C G A T A C T G C G T A A C G T
A T G C C T G A A T C G T A C G A G T C C G A T T C A G C G A T C T A G A G C T G T C A G T C A C G T A A G T C C G T A T A C G C T G A A C G T A C G T

Smad4(MAD)/ESC-SMAD4-ChIP-Seq(GSE29422)/Homer

Match Rank:2
Score:0.52
Offset:5
Orientation:reverse strand
Alignment:GCTGAGCAGACATGAT
-----CCAGACRSVB-
 A C T G A G T C A C G T A T C G C G T A A C T G A G T C C G T A A T C G C G T A A T G C C G T A C G A T A C T G C G T A A C G T
A C G T A C G T A C G T A C G T A C G T T A G C A G T C C G T A A C T G C G T A A G T C C T A G A T C G T A G C A T G C A C G T

ZNF416(Zf)/HEK293-ZNF416.GFP-ChIP-Seq(GSE58341)/Homer

Match Rank:3
Score:0.52
Offset:-2
Orientation:forward strand
Alignment:--GCTGAGCAGACATGAT
WDNCTGGGCA--------
 A C G T A C G T A C T G A G T C A C G T A T C G C G T A A C T G A G T C C G T A A T C G C G T A A T G C C G T A C G A T A C T G C G T A A C G T
G C A T C T A G G T A C A G T C C G A T A C T G C T A G C T A G G T A C G C T A A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T

PB0104.1_Zscan4_1/Jaspar

Match Rank:4
Score:0.51
Offset:-2
Orientation:forward strand
Alignment:--GCTGAGCAGACATGAT
TACATGTGCACATAAAA-
 A C G T A C G T A C T G A G T C A C G T A T C G C G T A A C T G A G T C C G T A A T C G C G T A A T G C C G T A C G A T A C T G C G T A A C G T
C A G T G T C A T G A C C T G A C G A T T C A G A G C T C T A G A G T C C T G A A G T C G C T A A G C T G C T A G C T A C G T A G T C A A C G T

FOXA1/MA0148.3/Jaspar

Match Rank:5
Score:0.51
Offset:1
Orientation:reverse strand
Alignment:GCTGAGCAGACATGAT
-CAAAGTAAACANNNN
 A C T G A G T C A C G T A T C G C G T A A C T G A G T C C G T A A T C G C G T A A T G C C G T A C G A T A C T G C G T A A C G T
A C G T G T A C G C T A T C G A C G T A C T A G A G C T G T C A G T C A C G T A A G T C G C T A C G A T T A C G T C A G C T G A

GATA:SCL(Zf,bHLH)/Ter119-SCL-ChIP-Seq(GSE18720)/Homer

Match Rank:6
Score:0.50
Offset:-2
Orientation:forward strand
Alignment:--GCTGAGCAGACATGAT--
CNGCTGNNGNNNNCAGATAA
 A C G T A C G T A C T G A G T C A C G T A T C G C G T A A C T G A G T C C G T A A T C G C G T A A T G C C G T A C G A T A C T G C G T A A C G T A C G T A C G T
T G A C C T A G A C T G T A G C C G A T A C T G A T G C C A T G A T C G A T C G A T C G T A G C C T G A T A G C G C T A A C T G C G T A A G C T C G T A C T G A

Smad2(MAD)/ES-SMAD2-ChIP-Seq(GSE29422)/Homer

Match Rank:7
Score:0.50
Offset:5
Orientation:reverse strand
Alignment:GCTGAGCAGACATGAT
-----CCAGACAG---
 A C T G A G T C A C G T A T C G C G T A A C T G A G T C C G T A A T C G C G T A A T G C C G T A C G A T A C T G C G T A A C G T
A C G T A C G T A C G T A C G T A C G T A T G C A G T C T G C A C T A G G T C A G T A C C T G A T A C G A C G T A C G T A C G T

NRL/MA0842.1/Jaspar

Match Rank:8
Score:0.50
Offset:-5
Orientation:forward strand
Alignment:-----GCTGAGCAGACATGAT
AATTTGCTGAC----------
 A C G T A C G T A C G T A C G T A C G T A C T G A G T C A C G T A T C G C G T A A C T G A G T C C G T A A T C G C G T A A T G C C G T A C G A T A C T G C G T A A C G T
C G T A C G T A G C A T G C A T G A C T T C A G G T A C G C A T C A T G G C T A A G T C A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T

Zic(Zf)/Cerebellum-ZIC1.2-ChIP-Seq(GSE60731)/Homer

Match Rank:9
Score:0.50
Offset:-3
Orientation:forward strand
Alignment:---GCTGAGCAGACATGAT
CCTGCTGAGH---------
 A C G T A C G T A C G T A C T G A G T C A C G T A T C G C G T A A C T G A G T C C G T A A T C G C G T A A T G C C G T A C G A T A C T G C G T A A C G T
A G T C G T A C A G C T C T A G A G T C C G A T A C T G C G T A A C T G G T C A A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T

GATA1::TAL1/MA0140.2/Jaspar

Match Rank:10
Score:0.49
Offset:1
Orientation:reverse strand
Alignment:GCTGAGCAGACATGAT---
-CTGNNNNNNNCAGATAAG
 A C T G A G T C A C G T A T C G C G T A A C T G A G T C C G T A A T C G C G T A A T G C C G T A C G A T A C T G C G T A A C G T A C G T A C G T A C G T
A C G T T A G C C G A T A C T G A G T C C G A T A G T C A T G C C A G T A G T C T G C A T A G C C G T A A C T G C G T A A C G T C G T A C T G A A C T G