Information for 19-AGCCTGCCTGGCT (Motif 26)

C T G A A C T G T G A C A G T C C G A T A C T G A G T C A G T C A G C T A T C G A C T G A G T C A C G T
Reverse Opposite:
T G C A A C T G T A G C T A G C C T G A T A C G A C T G G T A C C G T A A C T G A C T G T G A C A G C T
p-value:1e-9
log p-value:-2.148e+01
Information Content per bp:1.774
Number of Target Sequences with motif15.0
Percentage of Target Sequences with motif1.71%
Number of Background Sequences with motif87.4
Percentage of Background Sequences with motif0.20%
Average Position of motif in Targets46.1 +/- 19.3bp
Average Position of motif in Background44.3 +/- 23.8bp
Strand Bias (log2 ratio + to - strand density)-0.2
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

Pax8(Paired,Homeobox)/Thyroid-Pax8-ChIP-Seq(GSE26938)/Homer

Match Rank:1
Score:0.55
Offset:0
Orientation:forward strand
Alignment:AGCCTGCCTGGCT--
GTCATGCHTGRCTGS
 C T G A A C T G T G A C A G T C C G A T A C T G A G T C A G T C A G C T A T C G A C T G A G T C A C G T A C G T A C G T
A C T G A G C T A G T C G T C A A G C T T C A G A T G C G A T C G C A T A T C G T C G A T A G C C G A T C A T G T A G C

Smad2(MAD)/ES-SMAD2-ChIP-Seq(GSE29422)/Homer

Match Rank:2
Score:0.55
Offset:3
Orientation:forward strand
Alignment:AGCCTGCCTGGCT
---CTGTCTGG--
 C T G A A C T G T G A C A G T C C G A T A C T G A G T C A G T C A G C T A T C G A C T G A G T C A C G T
A C G T A C G T A C G T A T G C G A C T A C T G C A G T G A T C A C G T T A C G T A C G A C G T A C G T

Smad3(MAD)/NPC-Smad3-ChIP-Seq(GSE36673)/Homer

Match Rank:3
Score:0.54
Offset:-2
Orientation:reverse strand
Alignment:--AGCCTGCCTGGCT
BCAGACWA-------
 A C G T A C G T C T G A A C T G T G A C A G T C C G A T A C T G A G T C A G T C A G C T A T C G A C T G A G T C A C G T
A T G C A G T C C G T A C T A G G T C A A G T C C G T A T C G A A C G T A C G T A C G T A C G T A C G T A C G T A C G T

SMAD2::SMAD3::SMAD4/MA0513.1/Jaspar

Match Rank:4
Score:0.53
Offset:3
Orientation:forward strand
Alignment:AGCCTGCCTGGCT---
---CTGTCTGTCACCT
 C T G A A C T G T G A C A G T C C G A T A C T G A G T C A G T C A G C T A T C G A C T G A G T C A C G T A C G T A C G T A C G T
A C G T A C G T A C G T T A G C G C A T T C A G A C G T A G T C A C G T T A C G C A G T A T G C G C T A T A G C G A T C G A C T

PB0060.1_Smad3_1/Jaspar

Match Rank:5
Score:0.52
Offset:-1
Orientation:reverse strand
Alignment:-AGCCTGCCTGGCT---
NNTNNTGTCTGGNNTNG
 A C G T C T G A A C T G T G A C A G T C C G A T A C T G A G T C A G T C A G C T A T C G A C T G A G T C A C G T A C G T A C G T A C G T
C A G T A T C G C G A T T C A G T G C A G A C T A C T G C A G T A G T C A C G T T C A G T C A G G C T A G C A T C G A T G A C T C A T G

POL004.1_CCAAT-box/Jaspar

Match Rank:6
Score:0.52
Offset:4
Orientation:reverse strand
Alignment:AGCCTGCCTGGCT---
----TGATTGGCTANN
 C T G A A C T G T G A C A G T C C G A T A C T G A G T C A G T C A G C T A T C G A C T G A G T C A C G T A C G T A C G T A C G T
A C G T A C G T A C G T A C G T A G C T A T C G G C T A G C A T A C G T C T A G T A C G G A T C G A C T C T G A T C A G C A G T

Smad4(MAD)/ESC-SMAD4-ChIP-Seq(GSE29422)/Homer

Match Rank:7
Score:0.52
Offset:1
Orientation:forward strand
Alignment:AGCCTGCCTGGCT
-VBSYGTCTGG--
 C T G A A C T G T G A C A G T C C G A T A C T G A G T C A G T C A G C T A T C G A C T G A G T C A C G T
A C G T T A C G A T C G T A G C G A T C A C T G A C G T A G T C A C G T C T A G A T C G A C G T A C G T

POL010.1_DCE_S_III/Jaspar

Match Rank:8
Score:0.50
Offset:-1
Orientation:forward strand
Alignment:-AGCCTGCCTGGCT
CAGCC---------
 A C G T C T G A A C T G T G A C A G T C C G A T A C T G A G T C A G T C A G C T A T C G A C T G A G T C A C G T
T A G C C G T A A C T G A G T C A T G C A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T

NFYB/MA0502.1/Jaspar

Match Rank:9
Score:0.50
Offset:3
Orientation:reverse strand
Alignment:AGCCTGCCTGGCT-----
---CTGATTGGTCNATTT
 C T G A A C T G T G A C A G T C C G A T A C T G A G T C A G T C A G C T A T C G A C T G A G T C A C G T A C G T A C G T A C G T A C G T A C G T
A C G T A C G T A C G T A T G C A G C T A T C G C G T A A G C T A C G T A C T G A C T G G A C T A G T C T A G C T C G A C A G T C A G T A G C T

Hand1::Tcf3/MA0092.1/Jaspar

Match Rank:10
Score:0.49
Offset:4
Orientation:forward strand
Alignment:AGCCTGCCTGGCT-
----GGTCTGGCAT
 C T G A A C T G T G A C A G T C C G A T A C T G A G T C A G T C A G C T A T C G A C T G A G T C A C G T A C G T
A C G T A C G T A C G T A C G T A T C G C T A G G A C T A G T C A C G T A C T G A T C G G T A C C G T A C G A T