Information for 2-ATGMATAATKCAT (Motif 2)

G T C A A C G T A T C G G T C A C G T A A C G T C G T A C T G A A C G T C A G T A G T C C G T A C A G T
Reverse Opposite:
G T C A C G A T C T A G G T C A C G T A A G C T A C G T C G T A A C G T C A G T A T G C C G T A A C G T
p-value:1e-46
log p-value:-1.072e+02
Information Content per bp:1.822
Number of Target Sequences with motif18.0
Percentage of Target Sequences with motif2.05%
Number of Background Sequences with motif1.0
Percentage of Background Sequences with motif0.00%
Average Position of motif in Targets50.4 +/- 23.2bp
Average Position of motif in Background45.0 +/- 0.0bp
Strand Bias (log2 ratio + to - strand density)-0.3
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

Pit1+1bp(Homeobox)/GCrat-Pit1-ChIP-Seq(GSE58009)/Homer

Match Rank:1
Score:0.95
Offset:0
Orientation:forward strand
Alignment:ATGMATAATKCAT
ATGCATAATTCA-
 G T C A A C G T A T C G G T C A C G T A A C G T C G T A C T G A A C G T C A G T A G T C C G T A C A G T
G C T A C G A T C T A G G T A C G C T A C G A T C G T A G C T A C G A T C A G T G A T C G C T A A C G T

OCT:OCT(POU,Homeobox,IR1)/NPC-Brn2-ChIP-Seq(GSE35496)/Homer

Match Rank:2
Score:0.94
Offset:0
Orientation:forward strand
Alignment:ATGMATAATKCAT--
ATGAATWATTCATGA
 G T C A A C G T A T C G G T C A C G T A A C G T C G T A C T G A A C G T C A G T A G T C C G T A C A G T A C G T A C G T
G T C A A C G T C T A G G T C A C G T A G C A T C G T A C G T A G C A T C A G T A G T C C G T A C A G T C T A G C T G A

OCT:OCT-short(POU,Homeobox)/NPC-OCT6-ChIP-Seq(GSE43916)/Homer

Match Rank:3
Score:0.93
Offset:0
Orientation:forward strand
Alignment:ATGMATAATKCAT--
ATGCATWATGCATRW
 G T C A A C G T A T C G G T C A C G T A A C G T C G T A C T G A A C G T C A G T A G T C C G T A C A G T A C G T A C G T
C G T A A C G T A C T G G T A C C G T A A C G T C G T A C G T A A C G T A C T G A G T C C G T A A C G T C T G A G C A T

POU4F1/MA0790.1/Jaspar

Match Rank:4
Score:0.85
Offset:0
Orientation:forward strand
Alignment:ATGMATAATKCAT-
ATGAATAATTAATG
 G T C A A C G T A T C G G T C A C G T A A C G T C G T A C T G A A C G T C A G T A G T C C G T A C A G T A C G T
T C G A G A C T C T A G G T C A G C T A C G A T C G T A C G T A C G A T C G A T C G T A T C G A G A C T C A T G

POU4F3/MA0791.1/Jaspar

Match Rank:5
Score:0.82
Offset:0
Orientation:forward strand
Alignment:ATGMATAATKCAT---
ATGCATAATTAATGAG
 G T C A A C G T A T C G G T C A C G T A A C G T C G T A C T G A A C G T C A G T A G T C C G T A C A G T A C G T A C G T A C G T
C T G A A G C T C A T G G T A C G C T A C G A T C G T A C G T A C G A T C G A T C G T A C T G A G A C T C A T G G T C A T C A G

Brn2(POU,Homeobox)/NPC-Brn2-ChIP-Seq(GSE35496)/Homer

Match Rank:6
Score:0.79
Offset:0
Orientation:forward strand
Alignment:ATGMATAATKCAT
ATGAATATTC---
 G T C A A C G T A T C G G T C A C G T A A C G T C G T A C T G A A C G T C A G T A G T C C G T A C A G T
G C T A A G C T T A C G G T C A C T G A C G A T C T G A G C A T C A G T A G T C A C G T A C G T A C G T

PH0148.1_Pou3f3/Jaspar

Match Rank:7
Score:0.78
Offset:-5
Orientation:forward strand
Alignment:-----ATGMATAATKCAT
AAAATATGCATAATAAA-
 A C G T A C G T A C G T A C G T A C G T G T C A A C G T A T C G G T C A C G T A A C G T C G T A C T G A A C G T C A G T A G T C C G T A C A G T
G C T A G C T A C T A G C G T A G A C T G C T A G A C T C A T G G T A C C T G A C G A T C G T A G C T A C A G T C T G A C G T A C G T A A C G T

POU4F2/MA0683.1/Jaspar

Match Rank:8
Score:0.78
Offset:0
Orientation:forward strand
Alignment:ATGMATAATKCAT---
ATGCATAATTAATGAG
 G T C A A C G T A T C G G T C A C G T A A C G T C G T A C T G A A C G T C A G T A G T C C G T A C A G T A C G T A C G T A C G T
C T G A G A C T C T A G G T A C G C T A C G A T C G T A G C T A G C A T G C A T C T G A T C G A A C G T A C T G C T G A T C A G

Pit1(Homeobox)/GCrat-Pit1-ChIP-Seq(GSE58009)/Homer

Match Rank:9
Score:0.70
Offset:0
Orientation:forward strand
Alignment:ATGMATAATKCAT
ATGMATATDC---
 G T C A A C G T A T C G G T C A C G T A A C G T C G T A C T G A A C G T C A G T A G T C C G T A C A G T
G C T A A C G T C T A G G T A C G C T A G A C T C T G A G C A T C A T G G A T C A C G T A C G T A C G T

MF0010.1_Homeobox_class/Jaspar

Match Rank:10
Score:0.66
Offset:3
Orientation:forward strand
Alignment:ATGMATAATKCAT
---AATAATT---
 G T C A A C G T A T C G G T C A C G T A A C G T C G T A C T G A A C G T C A G T A G T C C G T A C A G T
A C G T A C G T A C G T G C T A C G T A G C A T C T G A C T G A C G A T C G A T A C G T A C G T A C G T