Information for 13-TGCTGGTGCCACC (Motif 19)

A C G T A C T G T A G C C G A T A C T G A C T G A C G T A C T G A G T C A G T C C G T A A G T C A G T C
Reverse Opposite:
A C T G A C T G A C G T A C T G A C T G A G T C C G T A T G A C A G T C C G T A A C T G A G T C C G T A
p-value:1e-10
log p-value:-2.444e+01
Information Content per bp:1.906
Number of Target Sequences with motif5.0
Percentage of Target Sequences with motif0.57%
Number of Background Sequences with motif1.0
Percentage of Background Sequences with motif0.00%
Average Position of motif in Targets41.0 +/- 20.5bp
Average Position of motif in Background57.7 +/- 3.3bp
Strand Bias (log2 ratio + to - strand density)2.0
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

PRDM9(Zf)/Testis-DMC1-ChIP-Seq(GSE35498)/Homer

Match Rank:1
Score:0.69
Offset:0
Orientation:reverse strand
Alignment:TGCTGGTGCCACC--
AGATGCTRCTRCCHT
 A C G T A C T G T A G C C G A T A C T G A C T G A C G T A C T G A G T C A G T C C G T A A G T C A G T C A C G T A C G T
C G T A T C A G T G C A C G A T C T A G T G A C G A C T C T A G A G T C G A C T C T A G A G T C G A T C G C T A G A C T

Hic1/MA0739.1/Jaspar

Match Rank:2
Score:0.67
Offset:5
Orientation:forward strand
Alignment:TGCTGGTGCCACC-
-----ATGCCAACC
 A C G T A C T G T A G C C G A T A C T G A C T G A C G T A C T G A G T C A G T C C G T A A G T C A G T C A C G T
A C G T A C G T A C G T A C G T A C G T T C G A A G C T T C A G T A G C G T A C G T C A T C G A A T G C A G T C

PB0029.1_Hic1_1/Jaspar

Match Rank:3
Score:0.64
Offset:2
Orientation:forward strand
Alignment:TGCTGGTGCCACC-----
--ACTATGCCAACCTACC
 A C G T A C T G T A G C C G A T A C T G A C T G A C G T A C T G A G T C A G T C C G T A A G T C A G T C A C G T A C G T A C G T A C G T A C G T
A C G T A C G T C G T A A G T C A C G T C T G A A C G T C T A G A T G C A G T C G T C A T G C A A G T C A G T C G C A T C T G A G A T C G A T C

Tbx5(T-box)/HL1-Tbx5.biotin-ChIP-Seq(GSE21529)/Homer

Match Rank:4
Score:0.59
Offset:6
Orientation:reverse strand
Alignment:TGCTGGTGCCACC-
------TGACACCT
 A C G T A C T G T A G C C G A T A C T G A C T G A C G T A C T G A G T C A G T C C G T A A G T C A G T C A C G T
A C G T A C G T A C G T A C G T A C G T A C G T G A C T T C A G C T G A A G T C C T G A T A G C G A T C G A C T

NFIX/MA0671.1/Jaspar

Match Rank:5
Score:0.58
Offset:4
Orientation:forward strand
Alignment:TGCTGGTGCCACC
----CGTGCCAAG
 A C G T A C T G T A G C C G A T A C T G A C T G A C G T A C T G A G T C A G T C C G T A A G T C A G T C
A C G T A C G T A C G T A C G T T A G C C A T G G C A T A C T G A T G C A G T C T G C A C T G A T A C G

NFIA/MA0670.1/Jaspar

Match Rank:6
Score:0.57
Offset:4
Orientation:forward strand
Alignment:TGCTGGTGCCACC-
----GGTGCCAAGT
 A C G T A C T G T A G C C G A T A C T G A C T G A C G T A C T G A G T C A G T C C G T A A G T C A G T C A C G T
A C G T A C G T A C G T A C G T T C A G C A T G A C G T A C T G A G T C A G T C C G T A C G T A T C A G C G A T

ZNF415(Zf)/HEK293-ZNF415.GFP-ChIP-Seq(GSE58341)/Homer

Match Rank:7
Score:0.57
Offset:-2
Orientation:forward strand
Alignment:--TGCTGGTGCCACC
GRTGMTRGAGCC---
 A C G T A C G T A C G T A C T G T A G C C G A T A C T G A C T G A C G T A C T G A G T C A G T C C G T A A G T C A G T C
A T C G T C G A G A C T A T C G T G A C A C G T C T A G A C T G C G T A A C T G A G T C G T A C A C G T A C G T A C G T

Slug(Zf)/Mesoderm-Snai2-ChIP-Seq(GSE61475)/Homer

Match Rank:8
Score:0.57
Offset:-1
Orientation:reverse strand
Alignment:-TGCTGGTGCCACC
SDGCAGGTGCNS--
 A C G T A C G T A C T G T A G C C G A T A C T G A C T G A C G T A C T G A G T C A G T C C G T A A G T C A G T C
A T C G C T A G C T A G A G T C C G T A A C T G A C T G A C G T A C T G A T G C G A T C A T G C A C G T A C G T

NF1-halfsite(CTF)/LNCaP-NF1-ChIP-Seq(Unpublished)/Homer

Match Rank:9
Score:0.56
Offset:5
Orientation:forward strand
Alignment:TGCTGGTGCCACC
-----TTGCCAAG
 A C G T A C T G T A G C C G A T A C T G A C T G A C G T A C T G A G T C A G T C C G T A A G T C A G T C
A C G T A C G T A C G T A C G T A C G T A G C T A C G T A C T G A T G C A G T C C G T A C T G A T A C G

HIC2/MA0738.1/Jaspar

Match Rank:10
Score:0.56
Offset:5
Orientation:forward strand
Alignment:TGCTGGTGCCACC-
-----ATGCCCACC
 A C G T A C T G T A G C C G A T A C T G A C T G A C G T A C T G A G T C A G T C C G T A A G T C A G T C A C G T
A C G T A C G T A C G T A C G T A C G T T C G A A G C T T C A G T G A C G T A C G T A C T C G A T A G C A G T C