Information for 1-CATGMATATGCATGRS (Motif 1)

A G T C G T C A C G A T T A C G G T A C C G T A A C G T C T G A A C G T A C T G A T G C C G T A A C G T A T C G T C G A A T C G
Reverse Opposite:
T A G C A G C T A T G C T G C A C G A T T A C G G T A C C G T A A G C T C G T A A C G T C A T G A T G C C G T A C A G T T C A G
p-value:1e-55
log p-value:-1.281e+02
Information Content per bp:1.727
Number of Target Sequences with motif21.0
Percentage of Target Sequences with motif2.39%
Number of Background Sequences with motif0.0
Percentage of Background Sequences with motif0.00%
Average Position of motif in Targets49.2 +/- 17.3bp
Average Position of motif in Background0.0 +/- 0.0bp
Strand Bias (log2 ratio + to - strand density)0.3
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

OCT:OCT(POU,Homeobox)/NPC-Brn1-ChIP-Seq(GSE35496)/Homer

Match Rank:1
Score:0.94
Offset:1
Orientation:forward strand
Alignment:CATGMATATGCATGRS
-ATGAATATTCATGAG
 A G T C G T C A C G A T T A C G G T A C C G T A A C G T C T G A A C G T A C T G A T G C C G T A A C G T A T C G T C G A A T C G
A C G T G C T A A C G T C T A G G T C A C G T A A C G T C G T A C G A T C A G T A G T C C G T A A C G T C T A G C T G A A T C G

OCT:OCT(POU,Homeobox)/NPC-OCT6-ChIP-Seq(GSE43916)/Homer

Match Rank:2
Score:0.89
Offset:-1
Orientation:reverse strand
Alignment:-CATGMATATGCATGRS
AYATGYATATGCATR--
 A C G T A G T C G T C A C G A T T A C G G T A C C G T A A C G T C T G A A C G T A C T G A T G C C G T A A C G T A T C G T C G A A T C G
C T G A G A C T C T G A G A C T C T A G G A T C C T G A G A C T C T G A G A C T C T A G G A T C C T G A G C A T C T A G A C G T A C G T

Pit1(Homeobox)/GCrat-Pit1-ChIP-Seq(GSE58009)/Homer

Match Rank:3
Score:0.83
Offset:1
Orientation:forward strand
Alignment:CATGMATATGCATGRS
-ATGMATATDC-----
 A G T C G T C A C G A T T A C G G T A C C G T A A C G T C T G A A C G T A C T G A T G C C G T A A C G T A T C G T C G A A T C G
A C G T G C T A A C G T C T A G G T A C G C T A G A C T C T G A G C A T C A T G G A T C A C G T A C G T A C G T A C G T A C G T

Brn2(POU,Homeobox)/NPC-Brn2-ChIP-Seq(GSE35496)/Homer

Match Rank:4
Score:0.81
Offset:1
Orientation:forward strand
Alignment:CATGMATATGCATGRS
-ATGAATATTC-----
 A G T C G T C A C G A T T A C G G T A C C G T A A C G T C T G A A C G T A C T G A T G C C G T A A C G T A T C G T C G A A T C G
A C G T G C T A A G C T T A C G G T C A C T G A C G A T C T G A G C A T C A G T A G T C A C G T A C G T A C G T A C G T A C G T

POU2F2/MA0507.1/Jaspar

Match Rank:5
Score:0.66
Offset:-1
Orientation:reverse strand
Alignment:-CATGMATATGCATGRS
ATATGCAAATNNN----
 A C G T A G T C G T C A C G A T T A C G G T A C C G T A A C G T C T G A A C G T A C T G A T G C C G T A A C G T A T C G T C G A A T C G
C G T A G A C T C T G A A C G T C T A G G A T C C G T A C G T A C G T A C G A T C A T G G T C A C T G A A C G T A C G T A C G T A C G T

PH0148.1_Pou3f3/Jaspar

Match Rank:6
Score:0.63
Offset:-4
Orientation:forward strand
Alignment:----CATGMATATGCATGRS
AAAATATGCATAATAAA---
 A C G T A C G T A C G T A C G T A G T C G T C A C G A T T A C G G T A C C G T A A C G T C T G A A C G T A C T G A T G C C G T A A C G T A T C G T C G A A T C G
G C T A G C T A C T A G C G T A G A C T G C T A G A C T C A T G G T A C C T G A C G A T C G T A G C T A C A G T C T G A C G T A C G T A A C G T A C G T A C G T

PB0178.1_Sox8_2/Jaspar

Match Rank:7
Score:0.63
Offset:-5
Orientation:reverse strand
Alignment:-----CATGMATATGCATGRS
NNTNTCATGAATGT-------
 A C G T A C G T A C G T A C G T A C G T A G T C G T C A C G A T T A C G G T A C C G T A A C G T C T G A A C G T A C T G A T G C C G T A A C G T A T C G T C G A A T C G
A T G C T A C G C A G T A C T G C G A T G A T C T G C A A G C T C T A G C G T A T C G A C G A T C T A G G A C T A C G T A C G T A C G T A C G T A C G T A C G T A C G T

PB0170.1_Sox17_2/Jaspar

Match Rank:8
Score:0.62
Offset:-4
Orientation:reverse strand
Alignment:----CATGMATATGCATGRS
NTTNTATGAATGTGNNC---
 A C G T A C G T A C G T A C G T A G T C G T C A C G A T T A C G G T A C C G T A A C G T C T G A A C G T A C T G A T G C C G T A A C G T A T C G T C G A A T C G
G C T A G C A T A G C T C T A G A G C T T C G A A G C T A C T G G C T A C T G A C G A T T C A G C A G T C A T G T C A G C G A T A T G C A C G T A C G T A C G T

Oct4(POU,Homeobox)/mES-Oct4-ChIP-Seq(GSE11431)/Homer

Match Rank:9
Score:0.59
Offset:-1
Orientation:reverse strand
Alignment:-CATGMATATGCATGRS
TTATGCAAAT-------
 A C G T A G T C G T C A C G A T T A C G G T A C C G T A A C G T C T G A A C G T A C T G A T G C C G T A A C G T A T C G T C G A A T C G
C G A T G C A T C T G A A C G T A C T G A G T C C G T A C T G A C G T A C G A T A C G T A C G T A C G T A C G T A C G T A C G T A C G T

Pou2f3/MA0627.1/Jaspar

Match Rank:10
Score:0.59
Offset:-3
Orientation:forward strand
Alignment:---CATGMATATGCATGRS
TTGTATGCAAATTAGA---
 A C G T A C G T A C G T A G T C G T C A C G A T T A C G G T A C C G T A A C G T C T G A A C G T A C T G A T G C C G T A A C G T A T C G T C G A A T C G
A C G T G C A T C A T G G A C T C G T A A G C T A C T G A G T C C G T A C G T A C G T A C A G T A C G T G T C A C T A G T G C A A C G T A C G T A C G T