Information for 10-TYRTGAATRWATGCAK (Motif 9)

A C G T A G T C C T G A A C G T A C T G G T C A C G T A A C G T C T G A C G A T C G T A A C G T A C T G A T G C C G T A A C G T
Reverse Opposite:
G T C A A C G T A T C G G T A C C G T A A C G T C G T A G A C T C G T A A C G T A C G T A G T C C G T A A G C T C T A G C G T A
p-value:1e-11
log p-value:-2.535e+01
Information Content per bp:1.862
Number of Target Sequences with motif5.0
Percentage of Target Sequences with motif0.72%
Number of Background Sequences with motif0.0
Percentage of Background Sequences with motif0.00%
Average Position of motif in Targets57.0 +/- 14.6bp
Average Position of motif in Background0.0 +/- 0.0bp
Strand Bias (log2 ratio + to - strand density)-0.6
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

PB0028.1_Hbp1_1/Jaspar

Match Rank:1
Score:0.68
Offset:-1
Orientation:forward strand
Alignment:-TYRTGAATRWATGCAK
ACTATGAATGAATGAT-
 A C G T A C G T A G T C C T G A A C G T A C T G G T C A C G T A A C G T C T G A C G A T C G T A A C G T A C T G A T G C C G T A A C G T
G C T A G T A C C G A T G C T A G C A T T A C G C G T A C G T A C G A T A C T G C T G A T C G A G A C T C A T G C T G A A G C T A C G T

PB0178.1_Sox8_2/Jaspar

Match Rank:2
Score:0.67
Offset:-4
Orientation:reverse strand
Alignment:----TYRTGAATRWATGCAK
NNTNTCATGAATGT------
 A C G T A C G T A C G T A C G T A C G T A G T C C T G A A C G T A C T G G T C A C G T A A C G T C T G A C G A T C G T A A C G T A C T G A T G C C G T A A C G T
A T G C T A C G C A G T A C T G C G A T G A T C T G C A A G C T C T A G C G T A T C G A C G A T C T A G G A C T A C G T A C G T A C G T A C G T A C G T A C G T

PH0148.1_Pou3f3/Jaspar

Match Rank:3
Score:0.61
Offset:5
Orientation:forward strand
Alignment:TYRTGAATRWATGCAK------
-----AAAATATGCATAATAAA
 A C G T A G T C C T G A A C G T A C T G G T C A C G T A A C G T C T G A C G A T C G T A A C G T A C T G A T G C C G T A A C G T A C G T A C G T A C G T A C G T A C G T A C G T
A C G T A C G T A C G T A C G T A C G T G C T A G C T A C T A G C G T A G A C T G C T A G A C T C A T G G T A C C T G A C G A T C G T A G C T A C A G T C T G A C G T A C G T A

PB0170.1_Sox17_2/Jaspar

Match Rank:4
Score:0.60
Offset:-3
Orientation:reverse strand
Alignment:---TYRTGAATRWATGCAK
NTTNTATGAATGTGNNC--
 A C G T A C G T A C G T A C G T A G T C C T G A A C G T A C T G G T C A C G T A A C G T C T G A C G A T C G T A A C G T A C T G A T G C C G T A A C G T
G C T A G C A T A G C T C T A G A G C T T C G A A G C T A C T G G C T A C T G A C G A T T C A G C A G T C A T G T C A G C G A T A T G C A C G T A C G T

PB0171.1_Sox18_2/Jaspar

Match Rank:5
Score:0.57
Offset:-1
Orientation:forward strand
Alignment:-TYRTGAATRWATGCAK
GGACTGAATTCATGCC-
 A C G T A C G T A G T C C T G A A C G T A C T G G T C A C G T A A C G T C T G A C G A T C G T A A C G T A C T G A T G C C G T A A C G T
C T A G A C T G C T G A A T G C A G C T C T A G G T C A C T G A G A C T C A G T G A T C T C G A C G A T C T A G G T A C T G A C A C G T

Pit1(Homeobox)/GCrat-Pit1-ChIP-Seq(GSE58009)/Homer

Match Rank:6
Score:0.57
Offset:2
Orientation:forward strand
Alignment:TYRTGAATRWATGCAK
--ATGMATATDC----
 A C G T A G T C C T G A A C G T A C T G G T C A C G T A A C G T C T G A C G A T C G T A A C G T A C T G A T G C C G T A A C G T
A C G T A C G T G C T A A C G T C T A G G T A C G C T A G A C T C T G A G C A T C A T G G A T C A C G T A C G T A C G T A C G T

PAX9/MA0781.1/Jaspar

Match Rank:7
Score:0.54
Offset:-2
Orientation:forward strand
Alignment:--TYRTGAATRWATGCAK
CGTCACGCATGACTGCA-
 A C G T A C G T A C G T A G T C C T G A A C G T A C T G G T C A C G T A A C G T C T G A C G A T C G T A A C G T A C T G A T G C C G T A A C G T
A T G C A C T G G C A T A G T C T G C A A G T C A C T G A T G C G C T A G A C T A T C G C T G A T A G C G A C T C A T G T G A C G T C A A C G T

Brn2(POU,Homeobox)/NPC-Brn2-ChIP-Seq(GSE35496)/Homer

Match Rank:8
Score:0.54
Offset:2
Orientation:forward strand
Alignment:TYRTGAATRWATGCAK
--ATGAATATTC----
 A C G T A G T C C T G A A C G T A C T G G T C A C G T A A C G T C T G A C G A T C G T A A C G T A C T G A T G C C G T A A C G T
A C G T A C G T G C T A A G C T T A C G G T C A C T G A C G A T C T G A G C A T C A G T A G T C A C G T A C G T A C G T A C G T

PB0068.1_Sox1_1/Jaspar

Match Rank:9
Score:0.54
Offset:-3
Orientation:reverse strand
Alignment:---TYRTGAATRWATGCAK
NNNTATTGAATTGNNN---
 A C G T A C G T A C G T A C G T A G T C C T G A A C G T A C T G G T C A C G T A A C G T C T G A C G A T C G T A A C G T A C T G A T G C C G T A A C G T
T G C A G C T A C A G T G C A T C G T A C G A T C G A T A T C G G C T A C G T A C G A T C G A T C T A G G T C A G C A T C G A T A C G T A C G T A C G T

PH0150.1_Pou4f3/Jaspar

Match Rank:10
Score:0.54
Offset:-4
Orientation:reverse strand
Alignment:----TYRTGAATRWATGCAK
GACNTCATTAATAANN----
 A C G T A C G T A C G T A C G T A C G T A G T C C T G A A C G T A C T G G T C A C G T A A C G T C T G A C G A T C G T A A C G T A C T G A T G C C G T A A C G T
C T A G C T G A T G A C G A T C C A G T G T A C C G T A C G A T C G A T C G T A C T G A C G A T C G T A G T C A A G T C C G A T A C G T A C G T A C G T A C G T