Information for 9-CATAVCCTGAACCCAC (Motif 6)

A G T C G T C A A G C T C T G A T A C G A T G C A G T C A G C T A C T G G T C A C G T A A G T C A G T C A G T C C G T A G T A C
Reverse Opposite:
A C T G C G A T C T A G C T A G A C T G A C G T A C G T A G T C C T G A C T A G A T C G A G T C A G C T T C G A A C G T A C T G
p-value:1e-13
log p-value:-3.125e+01
Information Content per bp:1.757
Number of Target Sequences with motif6.0
Percentage of Target Sequences with motif0.86%
Number of Background Sequences with motif1.6
Percentage of Background Sequences with motif0.00%
Average Position of motif in Targets62.0 +/- 25.5bp
Average Position of motif in Background47.6 +/- 13.3bp
Strand Bias (log2 ratio + to - strand density)2.6
Multiplicity (# of sites on avg that occur together)1.17
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

PB0057.1_Rxra_1/Jaspar

Match Rank:1
Score:0.57
Offset:2
Orientation:forward strand
Alignment:CATAVCCTGAACCCAC---
--TGTCGTGACCCCTTAAT
 A G T C G T C A A G C T C T G A T A C G A T G C A G T C A G C T A C T G G T C A C G T A A G T C A G T C A G T C C G T A G T A C A C G T A C G T A C G T
A C G T A C G T C A G T A T C G G A C T A G T C C A T G A G C T T C A G G T C A G T A C G T A C A G T C A G T C C G A T G A C T T C G A G T C A A G C T

PB0030.1_Hnf4a_1/Jaspar

Match Rank:2
Score:0.55
Offset:2
Orientation:reverse strand
Alignment:CATAVCCTGAACCCAC---
--NNANTTGACCCCTNNNN
 A G T C G T C A A G C T C T G A T A C G A T G C A G T C A G C T A C T G G T C A C G T A A G T C A G T C A G T C C G T A G T A C A C G T A C G T A C G T
A C G T A C G T A C G T G T A C C G T A T C G A A C G T A C G T C T A G G T C A G T A C G T A C A G T C A G T C C A G T A C T G T C A G G T C A T A C G

PB0157.1_Rara_2/Jaspar

Match Rank:3
Score:0.53
Offset:3
Orientation:reverse strand
Alignment:CATAVCCTGAACCCAC---
---NNCNTGACCCCGCTCT
 A G T C G T C A A G C T C T G A T A C G A T G C A G T C A G C T A C T G G T C A C G T A A G T C A G T C A G T C C G T A G T A C A C G T A C G T A C G T
A C G T A C G T A C G T A C G T T G C A T G A C C A G T G A C T T C A G C G T A G T A C G T A C A T G C T A G C T C A G G T A C C A G T G T A C C A G T

COUP-TFII(NR)/Artia-Nr2f2-ChIP-Seq(GSE46497)/Homer

Match Rank:4
Score:0.53
Offset:7
Orientation:reverse strand
Alignment:CATAVCCTGAACCCAC
-------TGACCYCT-
 A G T C G T C A A G C T C T G A T A C G A T G C A G T C A G C T A C T G G T C A C G T A A G T C A G T C A G T C C G T A G T A C
A C G T A C G T A C G T A C G T A C G T A C G T A C G T A G C T T C A G T G C A G T A C T G A C A G C T A G T C A G C T A C G T

PB0118.1_Esrra_2/Jaspar

Match Rank:5
Score:0.53
Offset:2
Orientation:reverse strand
Alignment:CATAVCCTGAACCCAC---
--NNNNTTGACCCCTNNNN
 A G T C G T C A A G C T C T G A T A C G A T G C A G T C A G C T A C T G G T C A C G T A A G T C A G T C A G T C C G T A G T A C A C G T A C G T A C G T
A C G T A C G T C A T G T A G C T A G C G A T C C G A T A G C T T C A G G C T A G T A C G A T C A G T C A G T C C G A T T G A C T A C G G T A C A T G C

THRb(NR)/Liver-NR1A2-ChIP-Seq(GSE52613)/Homer

Match Rank:6
Score:0.52
Offset:7
Orientation:reverse strand
Alignment:CATAVCCTGAACCCAC
-------TGACCTYA-
 A G T C G T C A A G C T C T G A T A C G A T G C A G T C A G C T A C T G G T C A C G T A A G T C A G T C A G T C C G T A G T A C
A C G T A C G T A C G T A C G T A C G T A C G T A C G T A G C T C T A G G C T A T G A C A T G C A G C T A G T C C G T A A C G T

RAR:RXR(NR),DR5/ES-RAR-ChIP-Seq(GSE56893)/Homer

Match Rank:7
Score:0.52
Offset:1
Orientation:reverse strand
Alignment:CATAVCCTGAACCCAC
-TGACCTTGACCT---
 A G T C G T C A A G C T C T G A T A C G A T G C A G T C A G C T A C T G G T C A C G T A A G T C A G T C A G T C C G T A G T A C
A C G T G A C T T A C G G C T A T G A C A G T C A G C T A C G T C T A G T C G A G T A C G T A C A G C T A C G T A C G T A C G T

MF0004.1_Nuclear_Receptor_class/Jaspar

Match Rank:8
Score:0.51
Offset:7
Orientation:reverse strand
Alignment:CATAVCCTGAACCCAC
-------TGACCT---
 A G T C G T C A A G C T C T G A T A C G A T G C A G T C A G C T A C T G G T C A C G T A A G T C A G T C A G T C C G T A G T A C
A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T C A T G G C T A G T A C G T A C G A C T A C G T A C G T A C G T

IRF4(IRF)/GM12878-IRF4-ChIP-Seq(GSE32465)/Homer

Match Rank:9
Score:0.50
Offset:5
Orientation:forward strand
Alignment:CATAVCCTGAACCCAC
-----ACTGAAACCA-
 A G T C G T C A A G C T C T G A T A C G A T G C A G T C A G C T A C T G G T C A C G T A A G T C A G T C A G T C C G T A G T A C
A C G T A C G T A C G T A C G T A C G T G C T A T A G C A G C T A T C G G T C A C G T A G C T A A T G C G A T C C T G A A C G T

Vdr/MA0693.1/Jaspar

Match Rank:10
Score:0.50
Offset:7
Orientation:reverse strand
Alignment:CATAVCCTGAACCCAC-------
-------TGAACTCNATGAACTC
 A G T C G T C A A G C T C T G A T A C G A T G C A G T C A G C T A C T G G T C A C G T A A G T C A G T C A G T C C G T A G T A C A C G T A C G T A C G T A C G T A C G T A C G T A C G T
A C G T A C G T A C G T A C G T A C G T A C G T A C G T G A C T T C A G T G C A T G C A G A T C A G C T A G T C C T G A C T G A G A C T T C A G T G C A T G C A G T A C A G C T A G T C