Information for 19-CTAAGGTTGC (Motif 36)

A G T C A C G T C G T A C G T A A C T G A C T G A C G T A C G T A C T G A G T C
Reverse Opposite:
A C T G A G T C C G T A C G T A A G T C A G T C A C G T A C G T C G T A A C T G
p-value:1e-5
log p-value:-1.206e+01
Information Content per bp:1.530
Number of Target Sequences with motif3.0
Percentage of Target Sequences with motif0.43%
Number of Background Sequences with motif2.8
Percentage of Background Sequences with motif0.01%
Average Position of motif in Targets52.3 +/- 16.2bp
Average Position of motif in Background47.7 +/- 20.6bp
Strand Bias (log2 ratio + to - strand density)10.0
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

Nr2e3/MA0164.1/Jaspar

Match Rank:1
Score:0.65
Offset:2
Orientation:reverse strand
Alignment:CTAAGGTTGC
--AAGCTTG-
 A G T C A C G T C G T A C G T A A C T G A C T G A C G T A C G T A C T G A G T C
A C G T A C G T C G T A C G T A A C T G A T G C A C G T A C G T C T A G A C G T

Znf423/MA0116.1/Jaspar

Match Rank:2
Score:0.65
Offset:-5
Orientation:forward strand
Alignment:-----CTAAGGTTGC
GGCACCCAGGGGTGC
 A C G T A C G T A C G T A C G T A C G T A G T C A C G T C G T A C G T A A C T G A C T G A C G T A C G T A C T G A G T C
T C A G A T C G G T A C G T C A A G T C A G T C G A T C C G T A C T A G A C T G A C T G A C T G A C G T A C T G G T A C

HLTF/MA0109.1/Jaspar

Match Rank:3
Score:0.61
Offset:-2
Orientation:reverse strand
Alignment:--CTAAGGTTGC
NNATAAGGNN--
 A C G T A C G T A G T C A C G T C G T A C G T A A C T G A C T G A C G T A C G T A C T G A G T C
C G T A A C G T G T C A G C A T C G T A C G T A A C T G A C T G C G A T G C A T A C G T A C G T

Six2(Homeobox)/NephronProgenitor-Six2-ChIP-Seq(GSE39837)/Homer

Match Rank:4
Score:0.61
Offset:-2
Orientation:reverse strand
Alignment:--CTAAGGTTGC
GKMTCADRTTWC
 A C G T A C G T A G T C A C G T C G T A C G T A A C T G A C T G A C G T A C G T A C T G A G T C
C T A G C A G T T G C A A C G T G A T C T C G A C T A G T C A G A C G T C A G T G C A T G A T C

PB0161.1_Rxra_2/Jaspar

Match Rank:5
Score:0.61
Offset:-3
Orientation:forward strand
Alignment:---CTAAGGTTGC---
TCGCGAAGGTTGTACT
 A C G T A C G T A C G T A G T C A C G T C G T A C G T A A C T G A C T G A C G T A C G T A C T G A G T C A C G T A C G T A C G T
C A G T T G A C T C A G G T A C T C A G G C T A G C T A C T A G A C T G A C G T A G C T T C A G A G C T C G T A G T A C C A G T

PB0055.1_Rfx4_1/Jaspar

Match Rank:6
Score:0.57
Offset:2
Orientation:reverse strand
Alignment:CTAAGGTTGC-------
--NNCGTTGCTATGGNN
 A G T C A C G T C G T A C G T A A C T G A C T G A C G T A C G T A C T G A G T C A C G T A C G T A C G T A C G T A C G T A C G T A C G T
A C G T A C G T G C T A A G T C A T G C C T A G A G C T G A C T C T A G A G T C A G C T C T G A C A G T T A C G A T C G C A G T T C G A

Six1(Homeobox)/Myoblast-Six1-ChIP-Chip(GSE20150)/Homer

Match Rank:7
Score:0.56
Offset:-2
Orientation:forward strand
Alignment:--CTAAGGTTGC
GKVTCADRTTWC
 A C G T A C G T A G T C A C G T C G T A C G T A A C T G A C T G A C G T A C G T A C T G A G T C
C T A G C A T G T G C A A C G T A G T C C G T A C A T G T C A G A C G T A C G T G C T A A G T C

PB0056.1_Rfxdc2_1/Jaspar

Match Rank:8
Score:0.55
Offset:2
Orientation:reverse strand
Alignment:CTAAGGTTGC-------
--NCCGTTGCTANGNGN
 A G T C A C G T C G T A C G T A A C T G A C T G A C G T A C G T A C T G A G T C A C G T A C G T A C G T A C G T A C G T A C G T A C G T
A C G T A C G T G A C T A G T C A T G C C T A G A C G T G A C T C T A G G A T C A G C T C T G A C A G T T A C G A T G C T C A G T C A G

Rfx5(HTH)/GM12878-Rfx5-ChIP-Seq(GSE31477)/Homer

Match Rank:9
Score:0.54
Offset:3
Orientation:reverse strand
Alignment:CTAAGGTTGC-----
---CTGTTGCTAGGS
 A G T C A C G T C G T A C G T A A C T G A C T G A C G T A C G T A C T G A G T C A C G T A C G T A C G T A C G T A C G T
A C G T A C G T A C G T A G T C C G A T A C T G A C G T G A C T C T A G A G T C A G C T C T G A C A T G C T A G T A C G

PB0154.1_Osr1_2/Jaspar

Match Rank:10
Score:0.53
Offset:-2
Orientation:reverse strand
Alignment:--CTAAGGTTGC----
NNNTTAGGTAGCNTNT
 A C G T A C G T A G T C A C G T C G T A C G T A A C T G A C T G A C G T A C G T A C T G A G T C A C G T A C G T A C G T A C G T
A C T G C A G T G C T A C A G T A G C T C G T A C T A G A C T G C G A T C T G A C T A G A G T C C T G A C G A T C T A G G A C T