Information for 7-CACGTGCACGGTGCAT (Motif 9)

T A G C C G T A A G T C T C A G C G A T A T C G A G T C G T C A G T A C A C T G A C T G C G A T A T C G A T G C T C G A A C G T
Reverse Opposite:
G T C A A C G T T A C G A T G C C G T A G T A C G T A C A C T G A C G T C T A G A T G C C G T A A G T C A C T G C G A T A T C G
p-value:1e-13
log p-value:-3.110e+01
Information Content per bp:1.710
Number of Target Sequences with motif6.0
Percentage of Target Sequences with motif0.84%
Number of Background Sequences with motif1.7
Percentage of Background Sequences with motif0.00%
Average Position of motif in Targets58.9 +/- 30.5bp
Average Position of motif in Background84.6 +/- 12.8bp
Strand Bias (log2 ratio + to - strand density)2.8
Multiplicity (# of sites on avg that occur together)1.33
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

OCT:OCT-short(POU,Homeobox)/NPC-OCT6-ChIP-Seq(GSE43916)/Homer

Match Rank:1
Score:0.59
Offset:1
Orientation:reverse strand
Alignment:CACGTGCACGGTGCAT
-WYATGCATWATGCAT
 T A G C C G T A A G T C T C A G C G A T A T C G A G T C G T C A G T A C A C T G A C T G C G A T A T C G A T G C T C G A A C G T
A C G T C G T A A G C T C G T A A C G T A C T G G T A C C G T A A C G T C G A T C G T A A C G T A C T G A G T C C G T A C G A T

Id2/MA0617.1/Jaspar

Match Rank:2
Score:0.58
Offset:-1
Orientation:reverse strand
Alignment:-CACGTGCACGGTGCAT
TCACGTGC---------
 A C G T T A G C C G T A A G T C T C A G C G A T A T C G A G T C G T C A G T A C A C T G A C T G C G A T A T C G A T G C T C G A A C G T
G A C T A G T C C G T A A G T C A C T G A C G T A C T G A G T C A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T

bHLHE40(bHLH)/HepG2-BHLHE40-ChIP-Seq(GSE31477)/Homer

Match Rank:3
Score:0.58
Offset:-3
Orientation:reverse strand
Alignment:---CACGTGCACGGTGCAT
NGKCACGTGM---------
 A C G T A C G T A C G T T A G C C G T A A G T C T C A G C G A T A T C G A G T C G T C A G T A C A C T G A C T G C G A T A T C G A T G C T C G A A C G T
T C G A T C A G C A T G A G T C C G T A A G T C C T A G A C G T A C T G G T A C A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T

MNT/MA0825.1/Jaspar

Match Rank:4
Score:0.57
Offset:-2
Orientation:forward strand
Alignment:--CACGTGCACGGTGCAT
ACCACGTGCC--------
 A C G T A C G T T A G C C G T A A G T C T C A G C G A T A T C G A G T C G T C A G T A C A C T G A C T G C G A T A T C G A T G C T C G A A C G T
C T G A T A G C G T A C C G T A A G T C C T A G A C G T A C T G T G A C G A T C A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T

HIF-1b(HLH)/T47D-HIF1b-ChIP-Seq(GSE59937)/Homer

Match Rank:5
Score:0.57
Offset:-1
Orientation:forward strand
Alignment:-CACGTGCACGGTGCAT
RTACGTGC---------
 A C G T T A G C C G T A A G T C T C A G C G A T A T C G A G T C G T C A G T A C A C T G A C T G C G A T A T C G A T G C T C G A A C G T
C T G A C A G T C T G A A G T C C T A G G A C T A T C G G T A C A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T

NPAS(bHLH)/Liver-NPAS-ChIP-Seq(GSE39860)/Homer

Match Rank:6
Score:0.57
Offset:0
Orientation:reverse strand
Alignment:CACGTGCACGGTGCAT
CACGTGBN--------
 T A G C C G T A A G T C T C A G C G A T A T C G A G T C G T C A G T A C A C T G A C T G C G A T A T C G A T G C T C G A A C G T
G T A C C T G A A G T C C T A G G C A T C A T G A C G T G C T A A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T

Mlxip/MA0622.1/Jaspar

Match Rank:7
Score:0.57
Offset:-1
Orientation:reverse strand
Alignment:-CACGTGCACGGTGCAT
ACACGTGC---------
 A C G T T A G C C G T A A G T C T C A G C G A T A T C G A G T C G T C A G T A C A C T G A C T G C G A T A T C G A T G C T C G A A C G T
G T C A A G T C C G T A A G T C A C T G A C G T A C T G T A G C A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T

ARNT::HIF1A/MA0259.1/Jaspar

Match Rank:8
Score:0.57
Offset:-1
Orientation:forward strand
Alignment:-CACGTGCACGGTGCAT
GGACGTGC---------
 A C G T T A G C C G T A A G T C T C A G C G A T A T C G A G T C G T C A G T A C A C T G A C T G C G A T A T C G A T G C T C G A A C G T
T A C G A C T G T C G A A G T C A C T G A C G T A C T G T A G C A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T

Npas2/MA0626.1/Jaspar

Match Rank:9
Score:0.57
Offset:-2
Orientation:reverse strand
Alignment:--CACGTGCACGGTGCAT
NACACGTGCN--------
 A C G T A C G T T A G C C G T A A G T C T C A G C G A T A T C G A G T C G T C A G T A C A C T G A C T G C G A T A T C G A T G C T C G A A C G T
A C T G T G C A A G T C C G T A A G T C A C T G A C G T A C T G A T G C G A T C A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T

Arnt/MA0004.1/Jaspar

Match Rank:10
Score:0.56
Offset:0
Orientation:forward strand
Alignment:CACGTGCACGGTGCAT
CACGTG----------
 T A G C C G T A A G T C T C A G C G A T A T C G A G T C G T C A G T A C A C T G A C T G C G A T A T C G A T G C T C G A A C G T
G T A C C T G A A G T C A C T G A C G T A C T G A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T