Information for 8-AATGCTAATGGCC (Motif 8)

T C G A C G T A A C G T A C T G A G T C G A C T C T G A C G T A A C G T C A T G C A T G A T G C A G T C
Reverse Opposite:
A C T G A T C G G A T C G A T C C G T A A C G T A G C T C T G A A C T G A G T C C G T A C G A T A G C T
p-value:1e-14
log p-value:-3.229e+01
Information Content per bp:1.809
Number of Target Sequences with motif7.0
Percentage of Target Sequences with motif0.98%
Number of Background Sequences with motif2.9
Percentage of Background Sequences with motif0.01%
Average Position of motif in Targets44.6 +/- 27.3bp
Average Position of motif in Background70.2 +/- 10.4bp
Strand Bias (log2 ratio + to - strand density)-0.4
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

Oct6(POU,Homeobox)/NPC-Pou3f1-ChIP-Seq(GSE35496)/Homer

Match Rank:1
Score:0.76
Offset:0
Orientation:forward strand
Alignment:AATGCTAATGGCC
WATGCAAATGAG-
 T C G A C G T A A C G T A C T G A G T C G A C T C T G A C G T A A C G T C A T G C A T G A T G C A G T C
G C A T C G T A C G A T A C T G A G T C G C T A C T G A C G T A C A G T A C T G C G T A T C A G A C G T

Brn1(POU,Homeobox)/NPC-Brn1-ChIP-Seq(GSE35496)/Homer

Match Rank:2
Score:0.75
Offset:0
Orientation:forward strand
Alignment:AATGCTAATGGCC
TATGCWAATBAV-
 T C G A C G T A A C G T A C T G A G T C G A C T C T G A C G T A A C G T C A T G C A T G A T G C A G T C
G A C T C G T A A C G T A C T G A G T C C G T A C T G A C G T A C A G T A C G T G T C A T C A G A C G T

POU3F4/MA0789.1/Jaspar

Match Rank:3
Score:0.71
Offset:0
Orientation:forward strand
Alignment:AATGCTAATGGCC
TATGCAAAT----
 T C G A C G T A A C G T A C T G A G T C G A C T C T G A C G T A A C G T C A T G C A T G A T G C A G T C
G C A T C T G A G A C T C A T G A G T C C G T A G C T A C G T A C G A T A C G T A C G T A C G T A C G T

Oct4(POU,Homeobox)/mES-Oct4-ChIP-Seq(GSE11431)/Homer

Match Rank:4
Score:0.71
Offset:-1
Orientation:reverse strand
Alignment:-AATGCTAATGGCC
TTATGCAAAT----
 A C G T T C G A C G T A A C G T A C T G A G T C G A C T C T G A C G T A A C G T C A T G C A T G A T G C A G T C
C G A T G C A T C T G A A C G T A C T G A G T C C G T A C T G A C G T A C G A T A C G T A C G T A C G T A C G T

Nanog(Homeobox)/mES-Nanog-ChIP-Seq(GSE11724)/Homer

Match Rank:5
Score:0.70
Offset:3
Orientation:reverse strand
Alignment:AATGCTAATGGCC
---GTTAATGGCC
 T C G A C G T A A C G T A C T G A G T C G A C T C T G A C G T A A C G T C A T G C A T G A T G C A G T C
A C G T A C G T A C G T A T C G A G C T C A G T T C G A C T G A C G A T C A T G C T A G A T G C G A T C

POU5F1B/MA0792.1/Jaspar

Match Rank:6
Score:0.70
Offset:0
Orientation:forward strand
Alignment:AATGCTAATGGCC
TATGCAAAT----
 T C G A C G T A A C G T A C T G A G T C G A C T C T G A C G T A A C G T C A T G C A T G A T G C A G T C
G A C T C G T A A G C T C A T G A G T C C G T A C G T A C G T A C G A T A C G T A C G T A C G T A C G T

POU3F2/MA0787.1/Jaspar

Match Rank:7
Score:0.69
Offset:-1
Orientation:forward strand
Alignment:-AATGCTAATGGCC
TTATGCAAATTA--
 A C G T T C G A C G T A A C G T A C T G A G T C G A C T C T G A C G T A A C G T C A T G C A T G A T G C A G T C
C G A T G C A T T C G A G A C T C A T G A G T C G C T A C G T A G C T A C G A T A C G T G C T A A C G T A C G T

POU3F1/MA0786.1/Jaspar

Match Rank:8
Score:0.69
Offset:-1
Orientation:forward strand
Alignment:-AATGCTAATGGCC
TTATGCAAATTA--
 A C G T T C G A C G T A A C G T A C T G A G T C G A C T C T G A C G T A A C G T C A T G C A T G A T G C A G T C
C G A T G C A T C T G A G A C T C A T G A G T C C G T A C G T A C G T A C G A T C A G T G C T A A C G T A C G T

Pou2f3/MA0627.1/Jaspar

Match Rank:9
Score:0.68
Offset:-3
Orientation:forward strand
Alignment:---AATGCTAATGGCC
TTGTATGCAAATTAGA
 A C G T A C G T A C G T T C G A C G T A A C G T A C T G A G T C G A C T C T G A C G T A A C G T C A T G C A T G A T G C A G T C
A C G T G C A T C A T G G A C T C G T A A G C T A C T G A G T C C G T A C G T A C G T A C A G T A C G T G T C A C T A G T G C A

PH0145.1_Pou2f3/Jaspar

Match Rank:10
Score:0.68
Offset:-3
Orientation:forward strand
Alignment:---AATGCTAATGGCC
TTGTATGCAAATTAGA
 A C G T A C G T A C G T T C G A C G T A A C G T A C T G A G T C G A C T C T G A C G T A A C G T C A T G C A T G A T G C A G T C
A C G T G C A T C A T G G A C T C G T A A G C T A C T G A G T C C G T A C G T A C G T A C A G T A C G T G T C A C T A G T G C A