Information for 3-TTCTGCATGC (Motif 3)

C G A T A G C T T G A C G C A T T C A G G A T C G C T A C A G T A T C G T G A C
Reverse Opposite:
A C T G T A G C G T C A C G A T C T A G A G T C C G T A A C T G T C G A G C T A
p-value:1e-17
log p-value:-4.066e+01
Information Content per bp:1.581
Number of Target Sequences with motif36.0
Percentage of Target Sequences with motif5.03%
Number of Background Sequences with motif322.5
Percentage of Background Sequences with motif0.76%
Average Position of motif in Targets48.5 +/- 27.3bp
Average Position of motif in Background52.3 +/- 43.8bp
Strand Bias (log2 ratio + to - strand density)-0.4
Multiplicity (# of sites on avg that occur together)1.09
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

PH0148.1_Pou3f3/Jaspar

Match Rank:1
Score:0.61
Offset:-4
Orientation:reverse strand
Alignment:----TTCTGCATGC---
TNNATTATGCATANNTT
 A C G T A C G T A C G T A C G T C G A T A G C T T G A C G C A T T C A G G A T C G C T A C A G T A T C G T G A C A C G T A C G T A C G T
G C A T G C A T G A C T G T C A C G A T C G A T C G T A A G C T C A T G G T A C C T G A C G A T C T G A G C A T G A C T C G A T C G A T

Pit1(Homeobox)/GCrat-Pit1-ChIP-Seq(GSE58009)/Homer

Match Rank:2
Score:0.61
Offset:-2
Orientation:reverse strand
Alignment:--TTCTGCATGC
GHATATKCAT--
 A C G T A C G T C G A T A G C T T G A C G C A T T C A G G A T C G C T A C A G T A T C G T G A C
C T A G G T A C C G T A G A C T C T G A C G A T C A T G G A T C C G T A C G A T A C G T A C G T

Brn2(POU,Homeobox)/NPC-Brn2-ChIP-Seq(GSE35496)/Homer

Match Rank:3
Score:0.61
Offset:-2
Orientation:reverse strand
Alignment:--TTCTGCATGC
GAATATTCAT--
 A C G T A C G T C G A T A G C T T G A C G C A T T C A G G A T C G C T A C A G T A T C G T G A C
T C A G G T C A C G T A A G C T C G T A G A C T C A G T A T G C T C G A C G A T A C G T A C G T

Pit1+1bp(Homeobox)/GCrat-Pit1-ChIP-Seq(GSE58009)/Homer

Match Rank:4
Score:0.59
Offset:-4
Orientation:reverse strand
Alignment:----TTCTGCATGC
TGAATTATGCAT--
 A C G T A C G T A C G T A C G T C G A T A G C T T G A C G C A T T C A G G A T C G C T A C A G T A T C G T G A C
C G A T C T A G G T C A G C T A C G A T G C A T G C T A C G A T C A T G G A T C G C T A C G A T A C G T A C G T

Arnt:Ahr(bHLH)/MCF7-Arnt-ChIP-Seq(Lo_et_al.)/Homer

Match Rank:5
Score:0.58
Offset:2
Orientation:reverse strand
Alignment:TTCTGCATGC--
--TTGCGTGCVA
 C G A T A G C T T G A C G C A T T C A G G A T C G C T A C A G T A T C G T G A C A C G T A C G T
A C G T A C G T A C G T C A G T A C T G A G T C T C A G C G A T C A T G G T A C T A G C C G T A

PB0178.1_Sox8_2/Jaspar

Match Rank:6
Score:0.57
Offset:-4
Orientation:reverse strand
Alignment:----TTCTGCATGC
NNTNTCATGAATGT
 A C G T A C G T A C G T A C G T C G A T A G C T T G A C G C A T T C A G G A T C G C T A C A G T A T C G T G A C
A T G C T A C G C A G T A C T G C G A T G A T C T G C A A G C T C T A G C G T A T C G A C G A T C T A G G A C T

OCT:OCT(POU,Homeobox,IR1)/NPC-Brn2-ChIP-Seq(GSE35496)/Homer

Match Rank:7
Score:0.57
Offset:-5
Orientation:forward strand
Alignment:-----TTCTGCATGC
ATGAATWATTCATGA
 A C G T A C G T A C G T A C G T A C G T C G A T A G C T T G A C G C A T T C A G G A T C G C T A C A G T A T C G T G A C
G T C A A C G T C T A G G T C A C G T A G C A T C G T A C G T A G C A T C A G T A G T C C G T A C A G T C T A G C T G A

OCT:OCT-short(POU,Homeobox)/NPC-OCT6-ChIP-Seq(GSE43916)/Homer

Match Rank:8
Score:0.56
Offset:-5
Orientation:forward strand
Alignment:-----TTCTGCATGC
ATGCATWATGCATRW
 A C G T A C G T A C G T A C G T A C G T C G A T A G C T T G A C G C A T T C A G G A T C G C T A C A G T A T C G T G A C
C G T A A C G T A C T G G T A C C G T A A C G T C G T A C G T A A C G T A C T G A G T C C G T A A C G T C T G A G C A T

PH0086.1_Irx5/Jaspar

Match Rank:9
Score:0.55
Offset:-2
Orientation:reverse strand
Alignment:--TTCTGCATGC-----
ANTNNTACATGTANNTN
 A C G T A C G T C G A T A G C T T G A C G C A T T C A G G A T C G C T A C A G T A T C G T G A C A C G T A C G T A C G T A C G T A C G T
G C T A G T C A G C A T G C A T C A G T C G A T G C T A A G T C C G T A G C A T T C A G C G A T G C T A C G A T G C T A G C A T G C A T

PH0082.1_Irx2/Jaspar

Match Rank:10
Score:0.53
Offset:-2
Orientation:reverse strand
Alignment:--TTCTGCATGC-----
ANTNTTACATGTATNTA
 A C G T A C G T C G A T A G C T T G A C G C A T T C A G G A T C G C T A C A G T A T C G T G A C A C G T A C G T A C G T A C G T A C G T
C G T A T G C A G C A T G A C T G A C T C G A T C G T A A G T C C G T A G C A T T A C G C G A T G C T A G A C T G C A T C G A T G C T A