Information for 6-CAGCCCTCAT (Motif 17)

A T G C G C T A C T A G G A T C T G A C A G T C C A G T A G T C C T G A C A G T
Reverse Opposite:
G T C A G A C T T C A G G T C A T C A G A C T G C T A G G A T C C G A T T A C G
p-value:1e-10
log p-value:-2.479e+01
Information Content per bp:1.530
Number of Target Sequences with motif26.0
Percentage of Target Sequences with motif3.64%
Number of Background Sequences with motif292.4
Percentage of Background Sequences with motif0.69%
Average Position of motif in Targets54.5 +/- 25.7bp
Average Position of motif in Background50.8 +/- 40.3bp
Strand Bias (log2 ratio + to - strand density)0.9
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

POL010.1_DCE_S_III/Jaspar

Match Rank:1
Score:0.64
Offset:0
Orientation:forward strand
Alignment:CAGCCCTCAT
CAGCC-----
 A T G C G C T A C T A G G A T C T G A C A G T C C A G T A G T C C T G A C A G T
T A G C C G T A A C T G A G T C A T G C A C G T A C G T A C G T A C G T A C G T

PB0024.1_Gcm1_1/Jaspar

Match Rank:2
Score:0.63
Offset:-2
Orientation:forward strand
Alignment:--CAGCCCTCAT----
TCGTACCCGCATCATT
 A C G T A C G T A T G C G C T A C T A G G A T C T G A C A G T C C A G T A G T C C T G A C A G T A C G T A C G T A C G T A C G T
G C A T T G A C T C A G C G A T T C G A G T A C G T A C G T A C A T C G A G T C C G T A A G C T T A G C C G T A G A C T C A G T

PH0169.1_Tgif1/Jaspar

Match Rank:3
Score:0.62
Offset:-3
Orientation:reverse strand
Alignment:---CAGCCCTCAT----
NNNCAGCTGTCAATATN
 A C G T A C G T A C G T A T G C G C T A C T A G G A T C T G A C A G T C C A G T A G T C C T G A C A G T A C G T A C G T A C G T A C G T
G C T A T G A C A T C G A T G C T G C A A T C G G A T C A G C T A C T G C G A T A G T C C G T A G C T A C G A T T G C A G A C T G T A C

GCM2/MA0767.1/Jaspar

Match Rank:4
Score:0.62
Offset:1
Orientation:reverse strand
Alignment:CAGCCCTCAT-
-TACCCGCATN
 A T G C G C T A C T A G G A T C T G A C A G T C C A G T A G T C C T G A C A G T A C G T
A C G T G A C T C T G A A G T C G T A C G T A C T A C G A G T C T C G A A G C T T G C A

TGIF1/MA0796.1/Jaspar

Match Rank:5
Score:0.62
Offset:-3
Orientation:reverse strand
Alignment:---CAGCCCTCAT
TGACAGCTGTCA-
 A C G T A C G T A C G T A T G C G C T A C T A G G A T C T G A C A G T C C A G T A G T C C T G A C A G T
G C A T C A T G C G T A A T G C T C G A A T C G T G A C A G C T T C A G A G C T A G T C C G T A A C G T

HOXA2(Homeobox)/mES-Hoxa2-ChIP-Seq(Donaldson_et_al.)/Homer

Match Rank:6
Score:0.62
Offset:-2
Orientation:forward strand
Alignment:--CAGCCCTCAT
GYCATCMATCAT
 A C G T A C G T A T G C G C T A C T A G G A T C T G A C A G T C C A G T A G T C C T G A C A G T
T A C G G A C T T G A C C G T A A C G T G A T C G T C A C G T A A C G T A T G C C G T A G A C T

PH0102.1_Meis1/Jaspar

Match Rank:7
Score:0.59
Offset:-3
Orientation:forward strand
Alignment:---CAGCCCTCAT---
AACGAGCTGTCAATAC
 A C G T A C G T A C G T A T G C G C T A C T A G G A T C T G A C A G T C C A G T A G T C C T G A C A G T A C G T A C G T A C G T
C G T A C G T A T A C G A T C G C T G A A T C G T G A C A G C T C T A G C G A T A G T C C G T A G C T A C G A T T G C A G A T C

TGIF2/MA0797.1/Jaspar

Match Rank:8
Score:0.59
Offset:-3
Orientation:reverse strand
Alignment:---CAGCCCTCAT
TGACAGCTGTCA-
 A C G T A C G T A C G T A T G C G C T A C T A G G A T C T G A C A G T C C A G T A G T C C T G A C A G T
G C A T T A C G C T G A G A T C C T G A A T C G G T A C G A C T C T A G G A C T G A T C C G T A A C G T

PB0099.1_Zfp691_1/Jaspar

Match Rank:9
Score:0.59
Offset:-4
Orientation:forward strand
Alignment:----CAGCCCTCAT---
CGAACAGTGCTCACTAT
 A C G T A C G T A C G T A C G T A T G C G C T A C T A G G A T C T G A C A G T C C A G T A G T C C T G A C A G T A C G T A C G T A C G T
A G T C C A T G G C T A T C G A G A T C T C G A A C T G C G A T C T A G G T A C A G C T A G T C T G C A A G T C G C A T C T G A C G A T

PKNOX1/MA0782.1/Jaspar

Match Rank:10
Score:0.59
Offset:-3
Orientation:reverse strand
Alignment:---CAGCCCTCAT
TGACACCTGTCA-
 A C G T A C G T A C G T A T G C G C T A C T A G G A T C T G A C A G T C C A G T A G T C C T G A C A G T
G C A T A T C G C G T A A G T C T C G A A T G C G T A C G A C T C A T G G A C T A T G C C T G A A C G T