Information for 9-TTCASGAATGAATGCA (Motif 11)

A C G T A G C T A T G C C G T A T A C G A C T G C G T A C G T A A C G T A C T G C T G A C T G A A C G T A C T G A G T C C G T A
Reverse Opposite:
A C G T A C T G A G T C G T C A A G C T A G C T A G T C C G T A C G A T G A C T A G T C A T C G C G A T A T C G C T G A C G T A
p-value:1e-13
log p-value:-3.110e+01
Information Content per bp:1.762
Number of Target Sequences with motif6.0
Percentage of Target Sequences with motif0.84%
Number of Background Sequences with motif0.0
Percentage of Background Sequences with motif0.00%
Average Position of motif in Targets62.5 +/- 19.3bp
Average Position of motif in Background0.0 +/- 0.0bp
Strand Bias (log2 ratio + to - strand density)0.0
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

PAX9/MA0781.1/Jaspar

Match Rank:1
Score:0.72
Offset:-1
Orientation:forward strand
Alignment:-TTCASGAATGAATGCA
CGTCACGCATGACTGCA
 A C G T A C G T A G C T A T G C C G T A T A C G A C T G C G T A C G T A A C G T A C T G C T G A C T G A A C G T A C T G A G T C C G T A
A T G C A C T G G C A T A G T C T G C A A G T C A C T G A T G C G C T A G A C T A T C G C T G A T A G C G A C T C A T G T G A C G T C A

PAX1/MA0779.1/Jaspar

Match Rank:2
Score:0.69
Offset:-1
Orientation:forward strand
Alignment:-TTCASGAATGAATGCA
CGTCACGCATGACTGCA
 A C G T A C G T A G C T A T G C C G T A T A C G A C T G C G T A C G T A A C G T A C T G C T G A C T G A A C G T A C T G A G T C C G T A
A T G C C A T G G C A T G A T C T G C A G A T C C A T G A T G C G C T A G A C T A T C G T C G A T A G C G A C T C A T G T G A C G T C A

Pax8(Paired,Homeobox)/Thyroid-Pax8-ChIP-Seq(GSE26938)/Homer

Match Rank:3
Score:0.64
Offset:0
Orientation:forward strand
Alignment:TTCASGAATGAATGCA
GTCATGCHTGRCTGS-
 A C G T A G C T A T G C C G T A T A C G A C T G C G T A C G T A A C G T A C T G C T G A C T G A A C G T A C T G A G T C C G T A
A C T G A G C T A G T C G T C A A G C T T C A G A T G C G A T C G C A T A T C G T C G A T A G C C G A T C A T G T A G C A C G T

Pax6/MA0069.1/Jaspar

Match Rank:4
Score:0.63
Offset:0
Orientation:forward strand
Alignment:TTCASGAATGAATGCA
TTCACGCATGAGTT--
 A C G T A G C T A T G C C G T A T A C G A C T G C G T A C G T A A C G T A C T G C T G A C T G A A C G T A C T G A G T C C G T A
A C G T G A C T G A T C G T C A G A T C C A T G A T G C C G T A A G C T A T C G C T G A T A C G A G C T C A G T A C G T A C G T

PAX5(Paired,Homeobox)/GM12878-PAX5-ChIP-Seq(GSE32465)/Homer

Match Rank:5
Score:0.62
Offset:-1
Orientation:reverse strand
Alignment:-TTCASGAATGAATGCA
NGTCACGCTTGGCTGC-
 A C G T A C G T A G C T A T G C C G T A T A C G A C T G C G T A C G T A A C G T A C T G C T G A C T G A A C G T A C T G A G T C C G T A
C T A G A C T G A G C T A G T C G T C A G A T C T C A G A T G C G C A T G A C T A T C G T C A G T A G C G A C T C T A G T G A C A C G T

PB0028.1_Hbp1_1/Jaspar

Match Rank:6
Score:0.57
Offset:4
Orientation:forward strand
Alignment:TTCASGAATGAATGCA----
----ACTATGAATGAATGAT
 A C G T A G C T A T G C C G T A T A C G A C T G C G T A C G T A A C G T A C T G C T G A C T G A A C G T A C T G A G T C C G T A A C G T A C G T A C G T A C G T
A C G T A C G T A C G T A C G T G C T A G T A C C G A T G C T A G C A T T A C G C G T A C G T A C G A T A C T G C T G A T C G A G A C T C A T G C T G A A G C T

Oct4:Sox17(POU,Homeobox,HMG)/F9-Sox17-ChIP-Seq(GSE44553)/Homer

Match Rank:7
Score:0.54
Offset:4
Orientation:forward strand
Alignment:TTCASGAATGAATGCA---
----CCATTGTATGCAAAT
 A C G T A G C T A T G C C G T A T A C G A C T G C G T A C G T A A C G T A C T G C T G A C T G A A C G T A C T G A G T C C G T A A C G T A C G T A C G T
A C G T A C G T A C G T A C G T A G T C G A T C G C T A C G A T A C G T T A C G G C A T C T G A G A C T A C T G A G T C G C T A C T G A T C G A C A G T

PAX6(Paired,Homeobox)/Forebrain-Pax6-ChIP-Seq(GSE66961)/Homer

Match Rank:8
Score:0.54
Offset:0
Orientation:reverse strand
Alignment:TTCASGAATGAATGCA----
TTTMCGCTTSABTGAACACN
 A C G T A G C T A T G C C G T A T A C G A C T G C G T A C G T A A C G T A C T G C T G A C T G A A C G T A C T G A G T C C G T A A C G T A C G T A C G T A C G T
A G C T C A G T G A C T T G A C G A T C T C A G A T G C G C A T A G C T T A C G C T G A A T C G G A C T C T A G T G C A T C G A A G T C G C T A A T G C T C G A

POL002.1_INR/Jaspar

Match Rank:9
Score:0.53
Offset:3
Orientation:reverse strand
Alignment:TTCASGAATGAATGCA
---NNNANTGA-----
 A C G T A G C T A T G C C G T A T A C G A C T G C G T A C G T A A C G T A C T G C T G A C T G A A C G T A C T G A G T C C G T A
A C G T A C G T A C G T T C G A T C G A C T A G C T G A T A G C C G A T A C T G G T C A A C G T A C G T A C G T A C G T A C G T

TEAD2(TEA)/Py2T-Tead2-ChIP-Seq(GSE55709)/Homer

Match Rank:10
Score:0.53
Offset:1
Orientation:forward strand
Alignment:TTCASGAATGAATGCA
-CCWGGAATGY-----
 A C G T A G C T A T G C C G T A T A C G A C T G C G T A C G T A A C G T A C T G C T G A C T G A A C G T A C T G A G T C C G T A
A C G T A T G C G A T C C G A T C T A G A C T G G C T A C G T A A G C T A C T G A G C T A C G T A C G T A C G T A C G T A C G T